Gm56107 Gene Detail

Summary

• Symbol
  Gm56107
• Name
  predicted gene, 56107

• Feature Type
  miRNA gene
• IDs
  MGI:6848673
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:29396616-29396704 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848673	miRNA gene	Chr6:29396616-29396704 (+)
129S1/SvImJ	ENSMUSG00200035270	miRNA gene	Chr6:26452441-26452529 (+)
A/J	ENSMUSG00195009071	miRNA gene	Chr6:26414934-26415022 (+)
AKR/J	ENSMUSG00220003820	miRNA gene	Chr6:26007996-26008084 (+)
BALB/cJ	ENSMUSG00180023479	miRNA gene	Chr6:26546601-26546689 (+)
C3H/HeJ	ENSMUSG00175020542	miRNA gene	Chr6:26409879-26409967 (+)
C57BL/6NJ	ENSMUSG00215026327	miRNA gene	Chr6:26436774-26436862 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027806	miRNA gene	Chr6:25985370-25985458 (+)
CBA/J	ENSMUSG00210004379	miRNA gene	Chr6:26431169-26431257 (+)
DBA/2J	ENSMUSG00185022209	miRNA gene	Chr6:26525673-26525761 (+)
FVB/NJ	ENSMUSG00205032644	miRNA gene	Chr6:26500083-26500171 (+)
JF1/MsJ	ENSUMUG00000041557	miRNA gene	Chr6:26205741-26205829 (+)
LP/J	ENSMUSG00230030470	miRNA gene	Chr6:27469095-27469183 (+)
NOD/ShiLtJ	ENSMUSG00190031421	miRNA gene	Chr6:26294745-26294833 (+)
NZO/HlLtJ	ENSMUSG00225014618	miRNA gene	Chr6:29430080-29430168 (+)
PWK/PhJ	ENSLUMG00010024517	miRNA gene	Chr6:25991301-25991389 (+)
SPRET/EiJ	ENSMSPG00010021760	miRNA gene	Chr6:26420568-26420656 (+)
WSB/EiJ	ENSIUOG00005035401	miRNA gene	Chr6:26596778-26596866 (+)

Homology

• Gene Tree
  Gm56107
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076777 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076777	Ensembl Gene Model | MGI Sequence Detail	89	C57BL/6J
transcript	ENSMUST00020182172	Ensembl | MGI Sequence Detail	89	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56107:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55248	Chr6:29396575-29396657 (+)	0 bp
Tssr55249	Chr6:29396664-29396665 (+)	49 bp