Gm56099 Gene Detail

Summary

• Symbol
  Gm56099
• Name
  predicted gene, 56099

• Feature Type
  rRNA gene
• IDs
  MGI:6848657
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:65293645-65293763 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848657	rRNA gene	Chr5:65293645-65293763 (+)
129S1/SvImJ	ENSMUSG00200035929	rRNA gene	Chr5:60910440-60910558 (+)
A/J	ENSMUSG00195000433	rRNA gene	Chr5:60280730-60280848 (+)
AKR/J	ENSMUSG00220007263	rRNA gene	Chr5:60422452-60422570 (+)
BALB/cJ	ENSMUSG00180006360	rRNA gene	Chr5:60066575-60066693 (+)
C3H/HeJ	ENSMUSG00175029555	rRNA gene	Chr5:62100941-62101059 (+)
C57BL/6NJ	ENSMUSG00215005701	rRNA gene	Chr5:60839325-60839443 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000712	rRNA gene	Chr5:59992531-59992649 (+)
CBA/J	ENSMUSG00210023704	rRNA gene	Chr5:61013909-61014027 (+)
DBA/2J	ENSMUSG00185005856	rRNA gene	Chr5:62871423-62871541 (+)
FVB/NJ	ENSMUSG00205011147	rRNA gene	Chr5:59823186-59823304 (+)
JF1/MsJ	ENSUMUG00000024159	rRNA gene	Chr5:67324581-67324699 (+)
LP/J	ENSMUSG00230009078	rRNA gene	Chr5:67523193-67523311 (+)
NOD/ShiLtJ	ENSMUSG00190000711	rRNA gene	Chr5:60005844-60005962 (+)
NZO/HlLtJ	ENSMUSG00225010574	rRNA gene	Chr5:72649235-72649353 (+)
PWK/PhJ	ENSLUMG00010004255	rRNA gene	Chr5:59950080-59950198 (+)
SPRET/EiJ	ENSMSPG00010038198	rRNA gene	Chr5:61771413-61771531 (+)
WSB/EiJ	ENSIUOG00005019616	rRNA gene	Chr5:62962326-62962444 (+)

Homology

• Gene Tree
  Gm56099
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076210 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076210	Ensembl Gene Model | MGI Sequence Detail	119	C57BL/6J
transcript	ENSMUST00020183067	Ensembl | MGI Sequence Detail	119	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56099:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46451	Chr5:65292557-65292568 (+)	-1,082 bp