Gm56050 Gene Detail

Summary

• Symbol
  Gm56050
• Name
  predicted gene, 56050

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6848559
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:52135412-52135536 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  50 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848559	unclassified non-coding RNA gene	Chr6:52135412-52135536 (+)
129S1/SvImJ	ENSMUSG00200005492	unclassified non-coding RNA gene	Chr6:49112732-49112856 (+)
A/J	ENSMUSG00195007051	unclassified non-coding RNA gene	Chr6:48836611-48836735 (+)
AKR/J	ENSMUSG00220004488	unclassified non-coding RNA gene	Chr6:48545720-48545844 (+)
BALB/cJ	ENSMUSG00180025444	unclassified non-coding RNA gene	Chr6:49138330-49138454 (+)
C3H/HeJ	ENSMUSG00175018248	unclassified non-coding RNA gene	Chr6:48904892-48905016 (+)
C57BL/6NJ	ENSMUSG00215011328	unclassified non-coding RNA gene	Chr6:49089180-49089304 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005116	unclassified non-coding RNA gene	Chr6:48395201-48395325 (+)
CBA/J	ENSMUSG00210018516	unclassified non-coding RNA gene	Chr6:48949189-48949313 (+)
DBA/2J	ENSMUSG00185013951	unclassified non-coding RNA gene	Chr6:49531442-49531566 (+)
FVB/NJ	ENSMUSG00205030962	unclassified non-coding RNA gene	Chr6:49189567-49189691 (+)
JF1/MsJ	ENSUMUG00000015755	unclassified non-coding RNA gene	Chr6:48904053-48904177 (+)
LP/J	ENSMUSG00230019837	unclassified non-coding RNA gene	Chr6:50610037-50610161 (+)
NOD/ShiLtJ	ENSMUSG00190036546	unclassified non-coding RNA gene	Chr6:48866595-48866719 (+)
NZO/HlLtJ	ENSMUSG00225013871	unclassified non-coding RNA gene	Chr6:52593980-52594104 (+)
PWK/PhJ	ENSLUMG00010021121	unclassified non-coding RNA gene	Chr6:48641077-48641201 (+)
SPRET/EiJ	ENSMSPG00010010317	unclassified non-coding RNA gene	Chr6:49225026-49225150 (+)
WSB/EiJ	ENSIUOG00005028895	unclassified non-coding RNA gene	Chr6:49212069-49212193 (+)

Homology

• Gene Tree
  Gm56050
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076637 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076637	Ensembl Gene Model | MGI Sequence Detail	125	C57BL/6J
transcript	ENSMUST00020183426	Ensembl | MGI Sequence Detail	125	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56050:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56499	Chr6:52135386-52135403 (+)	-17 bp
Tssr56500	Chr6:52135408-52135436 (+)	10 bp
Tssr56501	Chr6:52135445-52135464 (+)	43 bp