Gm55980 Gene Detail

Summary

• Symbol
  Gm55980
• Name
  predicted gene, 55980

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6848420
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:92130564-92130839 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848420	unclassified non-coding RNA gene	Chr5:92130564-92130839 (+)
129S1/SvImJ	ENSMUSG00200009337	unclassified non-coding RNA gene	Chr5:87873414-87873689 (+)
A/J	ENSMUSG00195026372	unclassified non-coding RNA gene	Chr5:87031693-87031968 (+)
AKR/J	ENSMUSG00220012251	unclassified non-coding RNA gene	Chr5:87183146-87183421 (+)
BALB/cJ	ENSMUSG00180025959	unclassified non-coding RNA gene	Chr5:86877535-86877810 (+)
C3H/HeJ	ENSMUSG00175045647	unclassified non-coding RNA gene	Chr5:88978339-88978614 (+)
C57BL/6NJ	ENSMUSG00215033540	unclassified non-coding RNA gene	Chr5:87730806-87731081 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037822	unclassified non-coding RNA gene	Chr5:86599579-86599854 (+)
CBA/J	ENSMUSG00210006858	unclassified non-coding RNA gene	Chr5:87757085-87757360 (+)
DBA/2J	ENSMUSG00185041497	unclassified non-coding RNA gene	Chr5:89693806-89694081 (+)
FVB/NJ	ENSMUSG00205031055	unclassified non-coding RNA gene	Chr5:86582512-86582787 (+)
JF1/MsJ	ENSUMUG00000046052	unclassified non-coding RNA gene	Chr5:93936399-93936674 (+)
LP/J	ENSMUSG00230028242	unclassified non-coding RNA gene	Chr5:94384609-94384884 (+)
NOD/ShiLtJ	ENSMUSG00190040360	unclassified non-coding RNA gene	Chr5:86660325-86660600 (+)
NZO/HlLtJ	ENSMUSG00225009541	unclassified non-coding RNA gene	Chr5:99531569-99531844 (+)
PWK/PhJ	ENSLUMG00010032498	unclassified non-coding RNA gene	Chr5:86623982-86624257 (+)
SPRET/EiJ	ENSMSPG00010037477	unclassified non-coding RNA gene	Chr5:88998179-88998454 (+)
WSB/EiJ	ENSIUOG00005030210	unclassified non-coding RNA gene	Chr5:89655826-89656101 (+)

Homology

• Gene Tree
  Gm55980
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075701 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075701	Ensembl Gene Model | MGI Sequence Detail	276	C57BL/6J
transcript	ENSMUST00020183388	Ensembl | MGI Sequence Detail	276	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;