Gm55939 Gene Detail

Summary

• Symbol
  Gm55939
• Name
  predicted gene, 55939

• Feature Type
  miRNA gene
• IDs
  MGI:6848339
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:93295996-93296133 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848339	miRNA gene	Chr3:93295996-93296133 (+)
129S1/SvImJ	ENSMUSG00200040196	miRNA gene	Chr3:90092551-90092688 (+)
A/J	ENSMUSG00195053894	miRNA gene	Chr3:90108839-90108976 (+)
AKR/J	ENSMUSG00220052669	miRNA gene	Chr3:89308190-89308327 (+)
BALB/cJ	ENSMUSG00180050554	miRNA gene	Chr3:90257823-90257960 (+)
C3H/HeJ	ENSMUSG00175050453	miRNA gene	Chr3:90051881-90052018 (+)
C57BL/6NJ	ENSMUSG00215050411	miRNA gene	Chr3:90639769-90639906 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049512	miRNA gene	Chr3:90413157-90413293 (+)
CBA/J	ENSMUSG00210049070	miRNA gene	Chr3:90158709-90158846 (+)
DBA/2J	ENSMUSG00185054108	miRNA gene	Chr3:90364576-90364713 (+)
FVB/NJ	ENSMUSG00205051680	miRNA gene	Chr3:89133373-89133510 (+)
JF1/MsJ	ENSUMUG00000054789	miRNA gene	Chr3:89932163-89932300 (+)
LP/J	ENSMUSG00230046408	miRNA gene	Chr3:92389491-92389628 (+)
NOD/ShiLtJ	ENSMUSG00190051708	miRNA gene	Chr3:90519319-90519456 (+)
NZO/HlLtJ	ENSMUSG00225012743	miRNA gene	Chr3:95222404-95222541 (+)
PWK/PhJ	ENSLUMG00010052968	miRNA gene	Chr3:89962900-89963042 (+)
SPRET/EiJ	ENSMSPG00010050866	miRNA gene	Chr3:90456100-90456232 (+)
WSB/EiJ	ENSIUOG00005050788	miRNA gene	Chr3:90669490-90669627 (+)

Homology

• Gene Tree
  Gm55939
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076970 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076970	Ensembl Gene Model | MGI Sequence Detail	138	C57BL/6J
transcript	ENSMUST00020182897	Ensembl | MGI Sequence Detail	138	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;