Gm55909 Gene Detail

Summary

• Symbol
  Gm55909
• Name
  predicted gene, 55909

• Feature Type
  rRNA gene
• IDs
  MGI:6848279
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:33023841-33023951 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848279	rRNA gene	Chr17:33023841-33023951 (-)
129S1/SvImJ	ENSMUSG00200054303	rRNA gene	Chr17:28699025-28699135 (-)
A/J	ENSMUSG00195054583	rRNA gene	Chr17:29637957-29638067 (-)
AKR/J	ENSMUSG00220053726	rRNA gene	Chr17:28666025-28666135 (-)
BALB/cJ	ENSMUSG00180050771	rRNA gene	Chr17:28973152-28973262 (-)
C3H/HeJ	ENSMUSG00175053784	rRNA gene	Chr17:28547056-28547166 (-)
C57BL/6NJ	ENSMUSG00215054627	rRNA gene	Chr17:28544124-28544234 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051407	rRNA gene	Chr17:29561287-29561397 (-)
CBA/J	ENSMUSG00210051257	rRNA gene	Chr17:28374003-28374113 (-)
DBA/2J	ENSMUSG00185054249	rRNA gene	Chr17:30985080-30985190 (-)
FVB/NJ	ENSMUSG00205053776	rRNA gene	Chr17:28870488-28870598 (-)
JF1/MsJ	ENSUMUG00000057903	rRNA gene	Chr17:30284384-30284494 (-)
LP/J	ENSMUSG00230054685	rRNA gene	Chr17:32097496-32097606 (-)
NOD/ShiLtJ	ENSMUSG00190054473	rRNA gene	Chr17:28484933-28485043 (-)
NZO/HlLtJ	ENSMUSG00225054934	rRNA gene	Chr17:34134499-34134609 (-)
PWK/PhJ	ENSLUMG00010053615	rRNA gene	Chr17:28127507-28127617 (-)
SPRET/EiJ	ENSMSPG00010050149	rRNA gene	Chr17:29227545-29227655 (-)
WSB/EiJ	ENSIUOG00005052298	rRNA gene	Chr17:29279395-29279505 (-)

Homology

• Gene Tree
  Gm55909
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076627 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076627	Ensembl Gene Model | MGI Sequence Detail	111	C57BL/6J
transcript	ENSMUST00020182340	Ensembl | MGI Sequence Detail	111	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55909:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147401	Chr17:33024672-33024684 (-)	-727 bp