Gm55902 Pseudogene Detail

Summary

• Symbol
  Gm55902
• Name
  predicted gene, 55902

• Feature Type
  pseudogene
• IDs
  MGI:6848266
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:24437407-24438045 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848266	pseudogene	Chr5:24437407-24438045 (+)
129S1/SvImJ	ENSMUSG00200011484	pseudogene	Chr5:20043138-20043780 (+)
A/J	ENSMUSG00195041172	pseudogene	Chr5:19515329-19515967 (+)
AKR/J	ENSMUSG00220040077	pseudogene	Chr5:19601741-19602395 (+)
BALB/cJ	ENSMUSG00180027312	pseudogene	Chr5:19385993-19386646 (+)
C3H/HeJ	ENSMUSG00175048737	pseudogene	Chr5:21313595-21314233 (+)
C57BL/6NJ	ENSMUSG00215028725	pseudogene	Chr5:19949278-19949916 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011533	pseudogene	Chr5:19151927-19152586 (+)
CAST/EiJ	ENSTCUG00005003393	pseudogene	Chr5:19522457-19523095 (+)
CBA/J	ENSMUSG00210048693	pseudogene	Chr5:20352872-20353510 (+)
DBA/2J	ENSMUSG00185038697	pseudogene	Chr5:21883931-21884572 (+)
FVB/NJ	ENSMUSG00205036826	pseudogene	Chr5:19114907-19115560 (+)
JF1/MsJ	ENSUMUG00000007219	pseudogene	Chr5:26448318-26448956 (+)
LP/J	ENSMUSG00230025956	pseudogene	Chr5:26325143-26325785 (+)
NOD/ShiLtJ	ENSMUSG00190005104	pseudogene	Chr5:19423090-19423744 (+)
NZO/HlLtJ	ENSMUSG00225020791	pseudogene	Chr5:31739189-31739844 (+)
PWK/PhJ	ENSLUMG00010036025	pseudogene	Chr5:19489760-19490403 (+)
SPRET/EiJ	ENSMSPG00010045813	pseudogene	Chr5:20355997-20356667 (+)
WSB/EiJ	ENSIUOG00005042301	pseudogene	Chr5:22245857-22246511 (+)

Homology

• Gene Tree
  Gm55902
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105141 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105141	Ensembl Gene Model | MGI Sequence Detail	639	C57BL/6J
transcript	ENSMUST00000196890	Ensembl | MGI Sequence Detail	639	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;