Gm55896 Pseudogene Detail

Summary

• Symbol
  Gm55896
• Name
  predicted gene, 55896

• Feature Type
  pseudogene
• IDs
  MGI:6848255
  NCBI Gene: 330053
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:24036078-24036621 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  68 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848255	pseudogene	Chr5:24035734-24036649 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195040679	pseudogene	Chr5:19113589-19114132 (-)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175049657	pseudogene	Chr5:20911799-20912342 (-)
C57BL/6NJ	ENSMUSG00215026156	pseudogene	Chr5:19547447-19547990 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003399	pseudogene	Chr5:19126285-19126827 (-)
CBA/J	ENSMUSG00210005415	pseudogene	Chr5:19951209-19951752 (-)
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000006967	pseudogene	Chr5:26046832-26047375 (-)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010036838	pseudogene	Chr5:19089397-19089940 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm55896
  

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000118627 (Evidence)
• NCBI Gene
  330053

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118627	Ensembl Gene Model | MGI Sequence Detail	544	C57BL/6J
transcript	ENSMUST00000126393	Ensembl | MGI Sequence Detail	544	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;