Gm55888 Gene Detail

Summary

• Symbol
  Gm55888
• Name
  predicted gene, 55888

• Feature Type
  miRNA gene
• IDs
  MGI:6848241
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:87943646-87943755 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  23

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848241	miRNA gene	Chr1:87943646-87943755 (+)
129S1/SvImJ	ENSMUSG00200038187	miRNA gene	Chr1:85169304-85169413 (+)
A/J	ENSMUSG00195032913	miRNA gene	Chr1:84729816-84729925 (+)
AKR/J	ENSMUSG00220046136	miRNA gene	Chr1:84863424-84863533 (+)
BALB/cJ	ENSMUSG00180018578	miRNA gene	Chr1:85032882-85032991 (+)
C3H/HeJ	ENSMUSG00175001684	miRNA gene	Chr1:84911796-84911905 (+)
C57BL/6NJ	ENSMUSG00215035382	miRNA gene	Chr1:84834797-84834906 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016726	miRNA gene	Chr4:15134790-15134899 (+)
CAST/EiJ	ENSTCUG00005001174	miRNA gene	Chr1:42801409-42801517 (-)
CAST/EiJ	ENSTCUG00005007853	miRNA gene	Chr1:84462904-84463013 (+)
CAST/EiJ	ENSTCUG00005003923	miRNA gene	Chr12:36298840-36298949 (+)
CAST/EiJ	ENSTCUG00005039333	miRNA gene	Chr6:67250569-67250678 (-)
CBA/J	ENSMUSG00210012387	miRNA gene	Chr1:84757099-84757208 (+)
DBA/2J	ENSMUSG00185017122	miRNA gene	Chr1:89214113-89214222 (+)
FVB/NJ	ENSMUSG00205044058	miRNA gene	Chr1:84163870-84163979 (+)
JF1/MsJ	ENSUMUG00000019042	miRNA gene	Chr1:87967923-87968032 (+)
JF1/MsJ	ENSUMUG00000017890	miRNA gene	Chr7:51349481-51349590 (+)
LP/J	ENSMUSG00230022734	miRNA gene	Chr1:88498824-88498933 (+)
NOD/ShiLtJ	ENSMUSG00190031970	miRNA gene	Chr1:84804642-84804751 (+)
NZO/HlLtJ	ENSMUSG00225004332	miRNA gene	Chr1:92401543-92401652 (+)
PWK/PhJ	ENSLUMG00010046936	miRNA gene	Chr1:84355009-84355118 (+)
SPRET/EiJ	ENSMSPG00010047749	miRNA gene	Chr1:86388418-86388527 (+)
WSB/EiJ	ENSIUOG00005043124	miRNA gene	Chr1:84392621-84392730 (+)

Homology

• Gene Tree
  Gm55888
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00002075025 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075025	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020182509	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;