Gm55842 Gene Detail

Summary

• Symbol
  Gm55842
• Name
  predicted gene, 55842

• Feature Type
  rRNA gene
• IDs
  MGI:6848149
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:161380118-161380235 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848149	rRNA gene	Chr1:161380118-161380235 (-)
129S1/SvImJ	ENSMUSG00200007961	rRNA gene	Chr1:158884852-158884969 (-)
A/J	ENSMUSG00195024764	rRNA gene	Chr1:158201250-158201367 (-)
AKR/J	ENSMUSG00220014223	rRNA gene	Chr1:157990795-157990912 (-)
BALB/cJ	ENSMUSG00180038390	rRNA gene	Chr1:158462795-158462912 (-)
C3H/HeJ	ENSMUSG00175048288	rRNA gene	Chr1:158519902-158520019 (-)
C57BL/6NJ	ENSMUSG00215040592	rRNA gene	Chr1:158399055-158399172 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021684	rRNA gene	Chr1:157043287-157043404 (-)
CBA/J	ENSMUSG00210021583	rRNA gene	Chr1:158417838-158417955 (-)
DBA/2J	ENSMUSG00185011911	rRNA gene	Chr1:162680212-162680329 (-)
FVB/NJ	ENSMUSG00205010187	rRNA gene	Chr1:157485841-157485958 (-)
JF1/MsJ	ENSUMUG00000013543	rRNA gene	Chr1:161841252-161841369 (-)
LP/J	ENSMUSG00230017608	rRNA gene	Chr1:162282686-162282803 (-)
NOD/ShiLtJ	ENSMUSG00190037734	rRNA gene	Chr1:158237567-158237684 (-)
NZO/HlLtJ	ENSMUSG00225005415	rRNA gene	Chr1:165890346-165890463 (-)
PWK/PhJ	ENSLUMG00010047202	rRNA gene	Chr1:157211228-157211345 (-)
SPRET/EiJ	ENSMSPG00010042590	rRNA gene	Chr1:160612552-160612669 (-)
WSB/EiJ	ENSIUOG00005016020	rRNA gene	Chr1:157796368-157796485 (-)

Homology

• Gene Tree
  Gm55842
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076072 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076072	Ensembl Gene Model | MGI Sequence Detail	118	C57BL/6J
transcript	ENSMUST00020183037	Ensembl | MGI Sequence Detail	118	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;