Gm55828 Gene Detail

Summary

• Symbol
  Gm55828
• Name
  predicted gene, 55828

• Feature Type
  miRNA gene
• IDs
  MGI:6848122
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:129418655-129418764 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  62

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848122	miRNA gene	Chr10:129418655-129418764 (-)
129S1/SvImJ	ENSMUSG00200013693	miRNA gene	Chr10:125777087-125777196 (-)
129S1/SvImJ	ENSMUSG00200002422	miRNA gene	Chr1:43095581-43095689 (-)
129S1/SvImJ	ENSMUSG00200003454	miRNA gene	Chr1:4334525-4334632 (+)
A/J	ENSMUSG00195017625	miRNA gene	Chr10:126246228-126246337 (-)
A/J	ENSMUSG00195002346	miRNA gene	Chr6:93778767-93778876 (-)
A/J	ENSMUSG00195003355	miRNA gene	Chr1:4154119-4154226 (+)
A/J	ENSMUSG00195002258	miRNA gene	Chr1:42830938-42831046 (-)
AKR/J	ENSMUSG00220004408	miRNA gene	Chr1:4212278-4212385 (+)
AKR/J	ENSMUSG00220006621	miRNA gene	Chr10:125848794-125848903 (-)
BALB/cJ	ENSMUSG00180009630	miRNA gene	Chr1:4231438-4231545 (+)
BALB/cJ	ENSMUSG00180011520	miRNA gene	Chr10:126231226-126231335 (-)
BALB/cJ	ENSMUSG00180010605	miRNA gene	Chr6:94163295-94163404 (-)
C3H/HeJ	ENSMUSG00175000523	miRNA gene	Chr1:4097494-4097601 (+)
C3H/HeJ	ENSMUSG00175024773	miRNA gene	Chr9:951245-951349 (-)
C3H/HeJ	ENSMUSG00175006231	miRNA gene	Chr10:126218066-126218175 (-)
C3H/HeJ	ENSMUSG00175000285	miRNA gene	Chr1:42869749-42869857 (-)
C57BL/6NJ	ENSMUSG00215019526	miRNA gene	Chr10:125837365-125837474 (-)
C57BL/6NJ	ENSMUSG00215043112	miRNA gene	Chr9:106400415-106400520 (-)
C57BL/6NJ	ENSMUSG00215004469	miRNA gene	Chr1:4134974-4135081 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041472	miRNA gene	Chr10:125175977-125176086 (-)
CBA/J	ENSMUSG00210002220	miRNA gene	Chr1:4012512-4012619 (+)
CBA/J	ENSMUSG00210030104	miRNA gene	Chr1:42553967-42554075 (-)
CBA/J	ENSMUSG00210009450	miRNA gene	Chr10:126042362-126042471 (-)
DBA/2J	ENSMUSG00185027663	miRNA gene	Chr10:126204303-126204412 (-)
DBA/2J	ENSMUSG00185004805	miRNA gene	Chr1:5026568-5026675 (+)
DBA/2J	ENSMUSG00185031867	miRNA gene	Chr1:43685532-43685640 (-)
DBA/2J	ENSMUSG00185020939	miRNA gene	Chr12:38100102-38100211 (+)
FVB/NJ	ENSMUSG00205013595	miRNA gene	Chr6:93153158-93153267 (-)
FVB/NJ	ENSMUSG00205005692	miRNA gene	Chr1:4296530-4296637 (+)
FVB/NJ	ENSMUSG00205025307	miRNA gene	Chr10:125447692-125447801 (-)
JF1/MsJ	ENSUMUG00000004278	miRNA gene	Chr3:114694006-114694115 (+)
JF1/MsJ	ENSUMUG00000044718	miRNA gene	Chr10:127507138-127507247 (-)
JF1/MsJ	ENSUMUG00000004905	miRNA gene	Chr1:4283523-4283630 (+)
JF1/MsJ	ENSUMUG00000003958	miRNA gene	Chr12:42320458-42320567 (+)
JF1/MsJ	ENSUMUG00000016564	miRNA gene	Chr2:33342134-33342239 (-)
JF1/MsJ	ENSUMUG00000002951	miRNA gene	Chr1:42740858-42740966 (-)
JF1/MsJ	ENSUMUG00000047583	miRNA gene	Chr6:66560857-66560966 (-)
JF1/MsJ	ENSUMUG00000032454	miRNA gene	ChrX:142923644-142923753 (-)
JF1/MsJ	ENSUMUG00000013492	miRNA gene	Chr13:1664611-1664720 (-)
LP/J	ENSMUSG00230033590	miRNA gene	Chr10:128147461-128147570 (-)
LP/J	ENSMUSG00230001647	miRNA gene	Chr1:43700824-43700932 (-)
LP/J	ENSMUSG00230002785	miRNA gene	Chr1:5041610-5041717 (+)
NOD/ShiLtJ	ENSMUSG00190016202	miRNA gene	Chr10:126281228-126281337 (-)
NOD/ShiLtJ	ENSMUSG00190003110	miRNA gene	Chr6:93608952-93609061 (-)
NOD/ShiLtJ	ENSMUSG00190002860	miRNA gene	Chr1:42760901-42761009 (-)
NOD/ShiLtJ	ENSMUSG00190001644	miRNA gene	Chr1:4158932-4159039 (+)
NZO/HlLtJ	ENSMUSG00225013350	miRNA gene	Chr10:132328886-132328995 (-)
NZO/HlLtJ	ENSMUSG00225001205	miRNA gene	Chr1:46935954-46936062 (-)
NZO/HlLtJ	ENSMUSG00225000289	miRNA gene	Chr1:8428711-8428818 (+)
PWK/PhJ	ENSLUMG00010002917	miRNA gene	Chr1:42315428-42315536 (-)
PWK/PhJ	ENSLUMG00010010542	miRNA gene	Chr10:125971267-125971376 (-)
PWK/PhJ	ENSLUMG00010013252	miRNA gene	Chr12:36423459-36423568 (+)
PWK/PhJ	ENSLUMG00010017829	miRNA gene	Chr13:1053083-1053192 (-)
PWK/PhJ	ENSLUMG00010010077	miRNA gene	Chr3:114560703-114560812 (+)
PWK/PhJ	ENSLUMG00010002776	miRNA gene	Chr1:3868785-3868892 (+)
PWK/PhJ	ENSLUMG00010045057	miRNA gene	Chr7:119844701-119844810 (-)
SPRET/EiJ	ENSMSPG00010037522	miRNA gene	Chr10:127954128-127954237 (-)
SPRET/EiJ	ENSMSPG00010014879	miRNA gene	Chr1:4511796-4511903 (+)
SPRET/EiJ	ENSMSPG00010006592	miRNA gene	Chr7:21364882-21364986 (-)
SPRET/EiJ	ENSMSPG00010038830	miRNA gene	Chr5:84083508-84083617 (-)
WSB/EiJ	ENSIUOG00005009041	miRNA gene	Chr10:125869280-125869389 (-)

Homology

• Gene Tree
  Gm55828
  

Sequences &
Gene Models

• All Sequences
  64

• Ensembl
  ENSMUSG00002076168 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076168	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020182646	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;