Gm55800 Gene Detail

Summary

• Symbol
  Gm55800
• Name
  predicted gene, 55800

• Feature Type
  miRNA gene
• IDs
  MGI:6848066
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:189125547-189125667 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848066	miRNA gene	Chr1:189125547-189125667 (+)
129S1/SvImJ	ENSMUSG00200004486	miRNA gene	Chr1:186891720-186891840 (+)
A/J	ENSMUSG00195009889	miRNA gene	Chr1:186469761-186469881 (+)
AKR/J	ENSMUSG00220005414	miRNA gene	Chr1:185713391-185713511 (+)
BALB/cJ	ENSMUSG00180018426	miRNA gene	Chr1:186537286-186537406 (+)
C3H/HeJ	ENSMUSG00175023067	miRNA gene	Chr1:186723331-186723451 (+)
C57BL/6NJ	ENSMUSG00215024721	miRNA gene	Chr1:185944715-185944835 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210003512	miRNA gene	Chr1:186391327-186391447 (+)
DBA/2J	ENSMUSG00185036377	miRNA gene	Chr1:191004486-191004606 (+)
FVB/NJ	ENSMUSG00205004593	miRNA gene	Chr1:185389126-185389246 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230025570	miRNA gene	Chr1:190537745-190537865 (+)
NOD/ShiLtJ	ENSMUSG00190033007	miRNA gene	Chr1:186365601-186365721 (+)
NZO/HlLtJ	ENSMUSG00225016886	miRNA gene	Chr1:194297014-194297134 (+)
PWK/PhJ	ENSLUMG00010006902	miRNA gene	Chr1:185223823-185223943 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005004739	miRNA gene	Chr1:185729625-185729745 (+)

Homology

• Gene Tree
  Gm55800
  

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00002075718 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075718	Ensembl Gene Model | MGI Sequence Detail	121	C57BL/6J
transcript	ENSMUST00020182472	Ensembl | MGI Sequence Detail	121	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;