Gm55796 Gene Detail

Summary

• Symbol
  Gm55796
• Name
  predicted gene, 55796

• Feature Type
  miRNA gene
• IDs
  MGI:6848058
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:93634125-93634234 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848058	miRNA gene	Chr4:93634125-93634234 (-)
129S1/SvImJ	ENSMUSG00200010872	miRNA gene	Chr4:88603280-88603389 (-)
A/J	ENSMUSG00195009702	miRNA gene	Chr4:89175776-89175885 (-)
AKR/J	ENSMUSG00220020402	miRNA gene	Chr4:88579095-88579204 (-)
BALB/cJ	ENSMUSG00180006510	miRNA gene	Chr4:88123203-88123312 (-)
C3H/HeJ	ENSMUSG00175002796	miRNA gene	Chr14:83109553-83109662 (+)
C3H/HeJ	ENSMUSG00175003796	miRNA gene	Chr7:44446714-44446821 (+)
C3H/HeJ	ENSMUSG00175008359	miRNA gene	Chr4:89062443-89062552 (-)
C3H/HeJ	ENSMUSG00175052641	miRNA gene	Chr7:91899933-91900042 (+)
C57BL/6NJ	ENSMUSG00215022849	miRNA gene	Chr4:89002443-89002552 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019712	miRNA gene	Chr4:88455375-88455484 (-)
CBA/J	ENSMUSG00210016738	miRNA gene	Chr4:88639092-88639201 (-)
DBA/2J	ENSMUSG00185003001	miRNA gene	Chr4:89392157-89392266 (-)
FVB/NJ	ENSMUSG00205014587	miRNA gene	Chr4:87557109-87557218 (-)
JF1/MsJ	ENSUMUG00000003841	miRNA gene	Chr4:89555467-89555576 (-)
LP/J	ENSMUSG00230023712	miRNA gene	Chr4:92714147-92714256 (-)
NOD/ShiLtJ	ENSMUSG00190017970	miRNA gene	Chr4:88077244-88077353 (-)
NZO/HlLtJ	ENSMUSG00225003298	miRNA gene	Chr4:97854356-97854465 (-)
PWK/PhJ	ENSLUMG00010003819	miRNA gene	Chr4:87311190-87311299 (-)
PWK/PhJ	ENSLUMG00010033601	miRNA gene	Chr13:29101775-29101884 (-)
PWK/PhJ	ENSLUMG00010038070	miRNA gene	Chr17:43940488-43940597 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005028795	miRNA gene	Chr17:44840008-44840117 (-)
WSB/EiJ	ENSIUOG00005028805	miRNA gene	Chr17:44980148-44980257 (+)
WSB/EiJ	ENSIUOG00005011244	miRNA gene	ChrX:142481731-142481840 (+)
WSB/EiJ	ENSIUOG00005047362	miRNA gene	Chr5:104953409-104953518 (-)
WSB/EiJ	ENSIUOG00005013105	miRNA gene	Chr4:88391601-88391710 (-)

Homology

• Gene Tree
  Gm55796
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm55796
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00002076093 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076093	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020182179	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48