Gm55782 Gene Detail

Summary

• Symbol
  Gm55782
• Name
  predicted gene, 55782

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6848030
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:85920810-85921032 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  59 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848030	unclassified non-coding RNA gene	Chr17:85920810-85921032 (+)
129S1/SvImJ	ENSMUSG00200023062	unclassified non-coding RNA gene	Chr17:81322840-81323066 (+)
A/J	ENSMUSG00195030151	unclassified non-coding RNA gene	Chr17:82696510-82696737 (+)
AKR/J	ENSMUSG00220016403	unclassified non-coding RNA gene	Chr17:81646285-81646514 (+)
BALB/cJ	ENSMUSG00180028624	unclassified non-coding RNA gene	Chr17:82369941-82370165 (+)
C3H/HeJ	ENSMUSG00175007169	unclassified non-coding RNA gene	Chr17:81634670-81634895 (+)
C57BL/6NJ	ENSMUSG00215018058	unclassified non-coding RNA gene	Chr17:81363251-81363473 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011852	unclassified non-coding RNA gene	Chr17:82190059-82190285 (+)
CBA/J	ENSMUSG00210022464	unclassified non-coding RNA gene	Chr17:81493469-81493695 (+)
DBA/2J	ENSMUSG00185021327	unclassified non-coding RNA gene	Chr17:84309726-84309948 (+)
FVB/NJ	ENSMUSG00205006134	unclassified non-coding RNA gene	Chr17:82114875-82115102 (+)
JF1/MsJ	ENSUMUG00000015830	unclassified non-coding RNA gene	Chr17:84037666-84037891 (+)
LP/J	ENSMUSG00230010700	unclassified non-coding RNA gene	Chr17:85341313-85341539 (+)
NOD/ShiLtJ	ENSMUSG00190009596	unclassified non-coding RNA gene	Chr17:81390166-81390390 (+)
NZO/HlLtJ	ENSMUSG00225031061	unclassified non-coding RNA gene	Chr17:87599141-87599366 (+)
PWK/PhJ	ENSLUMG00010033730	unclassified non-coding RNA gene	Chr17:81253512-81253736 (+)
SPRET/EiJ	ENSMSPG00010020625	unclassified non-coding RNA gene	Chr17:81833846-81834072 (+)
WSB/EiJ	ENSIUOG00005022138	unclassified non-coding RNA gene	Chr17:82307826-82308052 (+)

Homology

• Gene Tree
  Gm55782
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076730 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076730	Ensembl Gene Model | MGI Sequence Detail	223	C57BL/6J
transcript	ENSMUST00020182649	Ensembl | MGI Sequence Detail	223	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55782:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146084	Chr17:85920654-85920666 (+)	-150 bp
Tssr146085	Chr17:85920860-85920913 (+)	77 bp