Gm55648 Pseudogene Detail

Summary

• Symbol
  Gm55648
• Name
  predicted gene, 55648

• Feature Type
  pseudogene
• IDs
  MGI:6847764
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:62008245-62008377 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  73 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847764	pseudogene	Chr11:62008245-62008377 (+)
129S1/SvImJ	ENSMUSG00200037148	pseudogene	Chr11:58927445-58927577 (+)
A/J	ENSMUSG00195043392	pseudogene	Chr11:58967912-58968044 (+)
AKR/J	ENSMUSG00220050869	pseudogene	Chr11:59069815-59069947 (+)
BALB/cJ	ENSMUSG00180050704	pseudogene	Chr11:59021001-59021133 (+)
C3H/HeJ	ENSMUSG00175049651	pseudogene	Chr11:58985053-58985185 (+)
C57BL/6NJ	ENSMUSG00215040167	pseudogene	Chr11:58728009-58728141 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047737	pseudogene	Chr11:58541745-58541877 (+)
CBA/J	ENSMUSG00210043071	pseudogene	Chr11:58818104-58818236 (+)
DBA/2J	ENSMUSG00185045539	pseudogene	Chr11:58998910-58999042 (+)
FVB/NJ	ENSMUSG00205051971	pseudogene	Chr11:58889251-58889383 (+)
JF1/MsJ	ENSUMUG00000052499	pseudogene	Chr11:59439892-59440024 (+)
LP/J	ENSMUSG00230050352	pseudogene	Chr11:60148696-60148828 (+)
NOD/ShiLtJ	ENSMUSG00190051940	pseudogene	Chr11:58999243-58999375 (+)
NZO/HlLtJ	ENSMUSG00225048296	pseudogene	Chr11:62292186-62292318 (+)
PWK/PhJ	ENSLUMG00010038063	pseudogene	Chr11:58954070-58954202 (+)
SPRET/EiJ	ENSMSPG00010042083	pseudogene	Chr11:59618003-59618135 (+)
WSB/EiJ	ENSIUOG00005040091	pseudogene	Chr11:58919692-58919824 (+)

Homology

• Gene Tree
  Gm55648
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118644 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118644	Ensembl Gene Model | MGI Sequence Detail	133	C57BL/6J
transcript	ENSMUST00000239393	Ensembl | MGI Sequence Detail	133	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;