Gm55630 Gene Detail

Summary

• Symbol
  Gm55630
• Name
  predicted gene, 55630

• Feature Type
  miRNA gene
• IDs
  MGI:6847728
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:21937615-21937752 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847728	miRNA gene	Chr13:21937615-21937752 (+)
129S1/SvImJ	ENSMUSG00200014296	miRNA gene	Chr13:19136494-19136631 (+)
A/J	ENSMUSG00195039180	miRNA gene	Chr13:18278079-18278216 (+)
AKR/J	ENSMUSG00220032172	miRNA gene	Chr13:18193449-18193586 (+)
BALB/cJ	ENSMUSG00180038265	miRNA gene	Chr13:18639389-18639525 (+)
C3H/HeJ	ENSMUSG00175036500	miRNA gene	Chr13:18744531-18744668 (+)
C57BL/6NJ	ENSMUSG00215030352	miRNA gene	Chr13:18694009-18694146 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015300	miRNA gene	Chr13:18773637-18773774 (+)
CBA/J	ENSMUSG00210031324	miRNA gene	Chr13:18606069-18606206 (+)
DBA/2J	ENSMUSG00185014146	miRNA gene	Chr13:19300426-19300563 (+)
FVB/NJ	ENSMUSG00205051928	miRNA gene	Chr13:18449927-18450064 (+)
JF1/MsJ	ENSUMUG00000020957	miRNA gene	Chr13:19010433-19010570 (+)
LP/J	ENSMUSG00230035130	miRNA gene	Chr13:28694452-28694589 (+)
NOD/ShiLtJ	ENSMUSG00190024135	miRNA gene	Chr13:18559246-18559383 (+)
NZO/HlLtJ	ENSMUSG00225045847	miRNA gene	Chr13:22458163-22458300 (+)
PWK/PhJ	ENSLUMG00010031260	miRNA gene	Chr13:18009552-18009689 (+)
SPRET/EiJ	ENSMSPG00010019844	miRNA gene	Chr13:17734112-17734249 (+)
WSB/EiJ	ENSIUOG00005038515	miRNA gene	Chr13:17934785-17934922 (+)

Homology

• Gene Tree
  Gm55630
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075711 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075711	Ensembl Gene Model | MGI Sequence Detail	138	C57BL/6J
transcript	ENSMUST00020183336	Ensembl | MGI Sequence Detail	138	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55630:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118789	Chr13:21937597-21937624 (+)	-4 bp