Gm55580 Gene Detail

Summary

• Symbol
  Gm55580
• Name
  predicted gene, 55580

• Feature Type
  rRNA gene
• IDs
  MGI:6847628
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:101844790-101844890 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847628	rRNA gene	ChrX:101844790-101844890 (+)
129S1/SvImJ	ENSMUSG00200039852	rRNA gene	ChrX:83613690-83613790 (-)
129S1/SvImJ	ENSMUSG00200039377	rRNA gene	ChrX:83558706-83558806 (+)
A/J	ENSMUSG00195043327	rRNA gene	ChrX:87313483-87313583 (+)
A/J	ENSMUSG00195043755	rRNA gene	ChrX:87368480-87368580 (-)
AKR/J	ENSMUSG00220039389	rRNA gene	ChrX:82023852-82023952 (+)
BALB/cJ	ENSMUSG00180043369	rRNA gene	ChrX:84082687-84082787 (-)
BALB/cJ	ENSMUSG00180045496	rRNA gene	ChrX:83903011-83903111 (+)
C3H/HeJ	ENSMUSG00175047880	rRNA gene	ChrX:87750542-87750642 (+)
C3H/HeJ	ENSMUSG00175044829	rRNA gene	ChrX:87684211-87684311 (+)
C57BL/6NJ	ENSMUSG00215046817	rRNA gene	ChrX:84214408-84214508 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042575	rRNA gene	ChrX:85083224-85083324 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185046144	rRNA gene	ChrX:96899434-96899534 (+)
DBA/2J	ENSMUSG00185046928	rRNA gene	ChrX:96954571-96954671 (-)
FVB/NJ	ENSMUSG00205039826	rRNA gene	ChrX:83597839-83597939 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230044223	rRNA gene	ChrX:103647109-103647209 (-)
LP/J	ENSMUSG00230043945	rRNA gene	ChrX:103592112-103592212 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225046709	rRNA gene	ChrX:108767535-108767635 (+)
NZO/HlLtJ	ENSMUSG00225046714	rRNA gene	ChrX:108785682-108785782 (-)
NZO/HlLtJ	ENSMUSG00225046448	rRNA gene	ChrX:108693651-108693751 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm55580
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00002075815 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075815	Ensembl Gene Model | MGI Sequence Detail	101	C57BL/6J
transcript	ENSMUST00020182735	Ensembl | MGI Sequence Detail	101	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;