Gm55573 Gene Detail

Summary

• Symbol
  Gm55573
• Name
  predicted gene, 55573

• Feature Type
  rRNA gene
• IDs
  MGI:6847614
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:29349206-29349340 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847614	rRNA gene	Chr2:29349206-29349340 (+)
129S1/SvImJ	ENSMUSG00200053113	rRNA gene	Chr2:26319019-26319153 (+)
A/J	ENSMUSG00195050927	rRNA gene	Chr2:26413290-26413424 (+)
AKR/J	ENSMUSG00220053792	rRNA gene	Chr2:26531465-26531599 (+)
BALB/cJ	ENSMUSG00180054472	rRNA gene	Chr2:26432229-26432363 (+)
C3H/HeJ	ENSMUSG00175054051	rRNA gene	Chr2:26401558-26401692 (+)
C57BL/6NJ	ENSMUSG00215049377	rRNA gene	Chr2:26467203-26467337 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053532	rRNA gene	Chr2:26137763-26137897 (+)
CBA/J	ENSMUSG00210017970	rRNA gene	Chr2:26434707-26434841 (+)
DBA/2J	ENSMUSG00185053085	rRNA gene	Chr2:26327060-26327194 (+)
FVB/NJ	ENSMUSG00205051811	rRNA gene	Chr2:26179064-26179198 (+)
JF1/MsJ	ENSUMUG00000055963	rRNA gene	Chr2:26221481-26221615 (+)
LP/J	ENSMUSG00230045579	rRNA gene	Chr2:28254838-28254972 (+)
NOD/ShiLtJ	ENSMUSG00190053547	rRNA gene	Chr2:26433898-26434032 (+)
NZO/HlLtJ	ENSMUSG00225011112	rRNA gene	Chr2:36003979-36004113 (+)
PWK/PhJ	ENSLUMG00010052988	rRNA gene	Chr2:26296703-26296837 (+)
SPRET/EiJ	ENSMSPG00010047835	rRNA gene	Chr2:27027830-27027964 (+)
WSB/EiJ	ENSIUOG00005052676	rRNA gene	Chr2:26285546-26285680 (+)

Homology

• Gene Tree
  Gm55573
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075871 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075871	Ensembl Gene Model | MGI Sequence Detail	135	C57BL/6J
transcript	ENSMUST00020182680	Ensembl | MGI Sequence Detail	135	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55573:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17003	Chr2:29347378-29347382 (+)	-1,826 bp