Gm55544 Gene Detail

Summary

• Symbol
  Gm55544
• Name
  predicted gene, 55544

• Feature Type
  snRNA gene
• IDs
  MGI:6847557
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:61075900-61075998 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847557	snRNA gene	Chr13:61075900-61075998 (+)
129S1/SvImJ	ENSMUSG00200017097	snRNA gene	Chr13:58012911-58013009 (+)
A/J	ENSMUSG00195045172	snRNA gene	Chr13:57470395-57470493 (+)
AKR/J	ENSMUSG00220045423	snRNA gene	Chr13:56978481-56978579 (+)
BALB/cJ	ENSMUSG00180018730	snRNA gene	Chr13:57689889-57689987 (+)
C3H/HeJ	ENSMUSG00175044231	snRNA gene	Chr13:57475969-57476067 (+)
C57BL/6NJ	ENSMUSG00215039495	snRNA gene	Chr13:57483676-57483774 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042600	snRNA gene	Chr13:57878800-57878898 (+)
CBA/J	ENSMUSG00210043083	snRNA gene	Chr13:57680789-57680887 (+)
DBA/2J	ENSMUSG00185018276	snRNA gene	Chr13:58523884-58523982 (+)
FVB/NJ	ENSMUSG00205046007	snRNA gene	Chr13:57296278-57296376 (+)
JF1/MsJ	ENSUMUG00000035966	snRNA gene	Chr13:57869626-57869724 (+)
LP/J	ENSMUSG00230034705	snRNA gene	Chr13:67885777-67885875 (+)
NOD/ShiLtJ	ENSMUSG00190033830	snRNA gene	Chr13:57539742-57539840 (+)
NZO/HlLtJ	ENSMUSG00225047408	snRNA gene	Chr13:61579927-61580025 (+)
PWK/PhJ	ENSLUMG00010023866	snRNA gene	Chr13:56803077-56803175 (+)
SPRET/EiJ	ENSMSPG00010044470	snRNA gene	Chr13:57234668-57234767 (+)
WSB/EiJ	ENSIUOG00005026970	snRNA gene	Chr13:57012525-57012623 (+)

Homology

• Gene Tree
  Gm55544
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075540 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075540	Ensembl Gene Model | MGI Sequence Detail	99	C57BL/6J
transcript	ENSMUST00020182884	Ensembl | MGI Sequence Detail	99	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55544:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120141	Chr13:61075896-61075902 (+)	-1 bp