Gm55539 Gene Detail

Summary

• Symbol
  Gm55539
• Name
  predicted gene, 55539

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6847547
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:68314487-68314728 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847547	unclassified non-coding RNA gene	Chr2:68314487-68314728 (+)
129S1/SvImJ	ENSMUSG00200037224	unclassified non-coding RNA gene	Chr2:65382400-65382641 (+)
A/J	ENSMUSG00195022661	unclassified non-coding RNA gene	Chr2:65511612-65511853 (+)
AKR/J	ENSMUSG00220040512	unclassified non-coding RNA gene	Chr2:65478713-65478954 (+)
BALB/cJ	ENSMUSG00180042284	unclassified non-coding RNA gene	Chr2:65470488-65470729 (+)
C3H/HeJ	ENSMUSG00175039213	unclassified non-coding RNA gene	Chr2:65591669-65591910 (+)
C57BL/6NJ	ENSMUSG00215030762	unclassified non-coding RNA gene	Chr2:65409773-65410014 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009654	unclassified non-coding RNA gene	Chr2:64879959-64880200 (+)
CBA/J	ENSMUSG00210038164	unclassified non-coding RNA gene	Chr2:65631944-65632185 (+)
DBA/2J	ENSMUSG00185042194	unclassified non-coding RNA gene	Chr2:65469780-65470021 (+)
FVB/NJ	ENSMUSG00205037735	unclassified non-coding RNA gene	Chr2:64935251-64935492 (+)
JF1/MsJ	ENSUMUG00000006798	unclassified non-coding RNA gene	Chr2:65125012-65125253 (+)
LP/J	ENSMUSG00230023159	unclassified non-coding RNA gene	Chr2:67271277-67271518 (+)
NOD/ShiLtJ	ENSMUSG00190039741	unclassified non-coding RNA gene	Chr2:65555466-65555707 (+)
NZO/HlLtJ	ENSMUSG00225015438	unclassified non-coding RNA gene	Chr2:75007912-75008153 (+)
PWK/PhJ	ENSLUMG00010033581	unclassified non-coding RNA gene	Chr2:65318801-65319042 (+)
SPRET/EiJ	ENSMSPG00010037542	unclassified non-coding RNA gene	Chr2:66668463-66668704 (+)
WSB/EiJ	ENSIUOG00005020489	unclassified non-coding RNA gene	Chr2:65603569-65603810 (+)

Homology

• Gene Tree
  Gm55539
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076685 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076685	Ensembl Gene Model | MGI Sequence Detail	242	C57BL/6J
transcript	ENSMUST00020182770	Ensembl | MGI Sequence Detail	242	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;