Gm55522 Gene Detail

Summary

• Symbol
  Gm55522
• Name
  predicted gene, 55522

• Feature Type
  snRNA gene
  BioType Conflict
  
• IDs
  MGI:6847513
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:5874680-5874735 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847513	snRNA gene	Chr19:5874680-5874735 (-)
129S1/SvImJ	ENSMUSG00200053314	unclassified non-coding RNA gene	Chr19:2637097-2637152 (-)
A/J	ENSMUSG00195053999	unclassified non-coding RNA gene	Chr19:3032399-3032454 (-)
AKR/J	ENSMUSG00220050403	unclassified non-coding RNA gene	Chr19:2805524-2805579 (-)
BALB/cJ	ENSMUSG00180051362	unclassified non-coding RNA gene	Chr19:3407109-3407164 (-)
C3H/HeJ	ENSMUSG00175015089	unclassified non-coding RNA gene	Chr19:2657301-2657356 (-)
C57BL/6NJ	ENSMUSG00215048542	unclassified non-coding RNA gene	Chr19:2875394-2875449 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043175	unclassified non-coding RNA gene	Chr19:2794335-2794390 (-)
CBA/J	ENSMUSG00210050868	unclassified non-coding RNA gene	Chr19:2660081-2660136 (-)
DBA/2J	ENSMUSG00185053406	unclassified non-coding RNA gene	Chr19:3036570-3036625 (-)
FVB/NJ	ENSMUSG00205052790	unclassified non-coding RNA gene	Chr19:3042689-3042744 (-)
JF1/MsJ	ENSUMUG00000056942	unclassified non-coding RNA gene	Chr19:3012759-3012814 (-)
LP/J	ENSMUSG00230054306	unclassified non-coding RNA gene	Chr19:3943986-3944041 (-)
NOD/ShiLtJ	ENSMUSG00190052412	unclassified non-coding RNA gene	Chr19:2566903-2566958 (-)
NZO/HlLtJ	ENSMUSG00225026857	unclassified non-coding RNA gene	Chr19:7652798-7652853 (-)
PWK/PhJ	ENSLUMG00010008360	unclassified non-coding RNA gene	Chr19:2778358-2778413 (-)
SPRET/EiJ	ENSMSPG00010050493	unclassified non-coding RNA gene	Chr19:2766237-2766292 (-)
WSB/EiJ	ENSIUOG00005051887	unclassified non-coding RNA gene	Chr19:2674888-2674943 (-)

Homology

• Gene Tree
  Gm55522
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002074969 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002074969	Ensembl Gene Model | MGI Sequence Detail	56	C57BL/6J
transcript	ENSMUST00020183344	Ensembl | MGI Sequence Detail	56	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55522:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157766	Chr19:5876009-5876035 (-)	-1,287 bp