Gm55500 Gene Detail

Summary

• Symbol
  Gm55500
• Name
  predicted gene, 55500

• Feature Type
  miRNA gene
• IDs
  MGI:6847469
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:4265456-4265542 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847469	miRNA gene	Chr19:4265456-4265542 (-)
129S1/SvImJ	ENSMUSG00200052972	miRNA gene	Chr19:1025995-1026081 (-)
A/J	ENSMUSG00195053798	miRNA gene	Chr19:1417223-1417309 (-)
AKR/J	ENSMUSG00220051582	miRNA gene	Chr19:1190151-1190237 (-)
BALB/cJ	ENSMUSG00180051259	miRNA gene	Chr19:1791961-1792047 (-)
C3H/HeJ	ENSMUSG00175014154	miRNA gene	Chr19:1036696-1036782 (-)
C57BL/6NJ	ENSMUSG00215046955	miRNA gene	Chr19:1264309-1264395 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045084	miRNA gene	Chr19:1171117-1171204 (-)
CBA/J	ENSMUSG00210050149	miRNA gene	Chr19:1037024-1037110 (-)
DBA/2J	ENSMUSG00185052220	miRNA gene	Chr19:1413346-1413432 (-)
FVB/NJ	ENSMUSG00205053489	miRNA gene	Chr19:1414430-1414516 (-)
JF1/MsJ	ENSUMUG00000056107	miRNA gene	Chr19:1398686-1398772 (-)
LP/J	ENSMUSG00230054235	miRNA gene	Chr19:2332153-2332239 (-)
NOD/ShiLtJ	ENSMUSG00190052833	miRNA gene	Chr19:958297-958383 (-)
NZO/HlLtJ	ENSMUSG00225027184	miRNA gene	Chr19:6041004-6041090 (-)
PWK/PhJ	ENSLUMG00010008442	miRNA gene	Chr19:1175428-1175514 (-)
SPRET/EiJ	ENSMSPG00010050448	miRNA gene	Chr19:1155404-1155493 (-)
WSB/EiJ	ENSIUOG00005050808	miRNA gene	Chr19:1042390-1042476 (-)

Homology

• Gene Tree
  Gm55500
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075602 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075602	Ensembl Gene Model | MGI Sequence Detail	87	C57BL/6J
transcript	ENSMUST00020182287	Ensembl | MGI Sequence Detail	87	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55500:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157472	Chr19:4266149-4266164 (-)	-615 bp