Gm55488 Pseudogene Detail

Summary

• Symbol
  Gm55488
• Name
  predicted gene, 55488

• Feature Type
  pseudogene
• IDs
  MGI:6847446
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:27593487-27593543 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847446	pseudogene	Chr7:27593487-27593543 (-)
129S1/SvImJ	ENSMUSG00200046225	pseudogene	Chr7:17396258-17396314 (-)
A/J	ENSMUSG00195050492	pseudogene	Chr7:20057332-20057388 (-)
AKR/J	ENSMUSG00220053498	pseudogene	Chr7:24434130-24434186 (+)
BALB/cJ	ENSMUSG00180054317	pseudogene	Chr7:18116941-18116997 (-)
C3H/HeJ	ENSMUSG00175053106	pseudogene	Chr7:19152666-19152722 (-)
C57BL/6NJ	ENSMUSG00215054902	pseudogene	Chr7:17282591-17282647 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052708	pseudogene	Chr7:19095449-19095505 (-)
CBA/J	ENSMUSG00210053489	pseudogene	Chr7:18337295-18337351 (-)
DBA/2J	ENSMUSG00185053426	pseudogene	Chr7:21444260-21444316 (-)
FVB/NJ	ENSMUSG00205052389	pseudogene	Chr7:18126722-18126778 (-)
JF1/MsJ	ENSUMUG00000057943	pseudogene	Chr7:25882612-25882668 (-)
LP/J	ENSMUSG00230053849	pseudogene	Chr7:26614793-26614849 (-)
NOD/ShiLtJ	ENSMUSG00190053518	pseudogene	Chr7:17778511-17778567 (-)
NZO/HlLtJ	ENSMUSG00225027428	pseudogene	Chr7:25467028-25467084 (-)
PWK/PhJ	ENSLUMG00010052442	pseudogene	Chr7:17837136-17837192 (-)
SPRET/EiJ	ENSMSPG00010051853	pseudogene	Chr7:17201245-17201301 (-)
WSB/EiJ	ENSIUOG00005053763	pseudogene	Chr7:12043503-12043559 (-)

Homology

• Gene Tree
  Gm55488
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118641 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118641	Ensembl Gene Model | MGI Sequence Detail	57	C57BL/6J
transcript	ENSMUST00000239484	Ensembl | MGI Sequence Detail	57	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;