Gm55462 Gene Detail

Summary

• Symbol
  Gm55462
• Name
  predicted gene, 55462

• Feature Type
  snoRNA gene
• IDs
  MGI:6847394
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:86279730-86279809 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  54 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847394	snoRNA gene	Chr1:86279730-86279809 (-)
129S1/SvImJ	ENSMUSG00200037977	snoRNA gene	Chr1:83495591-83495670 (-)
A/J	ENSMUSG00195032836	snoRNA gene	Chr1:83067871-83067950 (-)
AKR/J	ENSMUSG00220044976	snoRNA gene	Chr1:83190999-83191078 (-)
BALB/cJ	ENSMUSG00180016702	snoRNA gene	Chr1:83366963-83367042 (-)
C3H/HeJ	ENSMUSG00175001607	snoRNA gene	Chr1:83246702-83246781 (-)
C57BL/6NJ	ENSMUSG00215033779	snoRNA gene	Chr1:83168741-83168820 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007710	snoRNA gene	Chr1:82819823-82819902 (-)
CBA/J	ENSMUSG00210012365	snoRNA gene	Chr1:83091266-83091345 (-)
DBA/2J	ENSMUSG00185017311	snoRNA gene	Chr1:87563076-87563155 (-)
FVB/NJ	ENSMUSG00205042583	snoRNA gene	Chr1:82502458-82502537 (-)
JF1/MsJ	ENSUMUG00000019645	snoRNA gene	Chr1:86339314-86339393 (-)
LP/J	ENSMUSG00230023040	snoRNA gene	Chr1:86841515-86841594 (-)
NOD/ShiLtJ	ENSMUSG00190031157	snoRNA gene	Chr1:83146339-83146418 (-)
NZO/HlLtJ	ENSMUSG00225005047	snoRNA gene	Chr1:90744331-90744410 (-)
PWK/PhJ	ENSLUMG00010046159	snoRNA gene	Chr1:82716227-82716306 (-)
SPRET/EiJ	ENSMSPG00010048091	snoRNA gene	Chr1:84720088-84720167 (-)
WSB/EiJ	ENSIUOG00005041346	snoRNA gene	Chr1:82749468-82749547 (-)

Homology

• Gene Tree
  Gm55462
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076827 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076827	Ensembl Gene Model | MGI Sequence Detail	80	C57BL/6J
transcript	ENSMUST00020182237	Ensembl | MGI Sequence Detail	80	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55462:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12770	Chr1:86279806-86279810 (-)	1 bp