Gm55442 Gene Detail

Summary

• Symbol
  Gm55442
• Name
  predicted gene, 55442

• Feature Type
  snRNA gene
• IDs
  MGI:6847354
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:75908308-75908465 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  73 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847354	snRNA gene	Chr15:75908308-75908465 (+)
129S1/SvImJ	ENSMUSG00200053798	snRNA gene	Chr15:73025561-73025718 (+)
A/J	ENSMUSG00195051596	snRNA gene	Chr15:72999992-73000149 (+)
AKR/J	ENSMUSG00220052801	snRNA gene	Chr15:73011043-73011200 (+)
BALB/cJ	ENSMUSG00180053683	snRNA gene	Chr15:72826707-72826864 (+)
C3H/HeJ	ENSMUSG00175053447	snRNA gene	Chr15:73188585-73188742 (+)
C57BL/6NJ	ENSMUSG00215053410	snRNA gene	Chr15:72917388-72917545 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048528	snRNA gene	Chr15:72535230-72535387 (+)
CBA/J	ENSMUSG00210049133	snRNA gene	Chr15:72963827-72963984 (+)
DBA/2J	ENSMUSG00185052390	snRNA gene	Chr15:72942547-72942704 (+)
FVB/NJ	ENSMUSG00205051216	snRNA gene	Chr15:72693262-72693419 (+)
JF1/MsJ	ENSUMUG00000056078	snRNA gene	Chr15:72601219-72601376 (+)
LP/J	ENSMUSG00230052918	snRNA gene	Chr15:76306517-76306674 (+)
NOD/ShiLtJ	ENSMUSG00190053301	snRNA gene	Chr15:72946210-72946367 (+)
NZO/HlLtJ	ENSMUSG00225054020	snRNA gene	Chr15:76611039-76611196 (+)
PWK/PhJ	ENSLUMG00010052072	snRNA gene	Chr15:72882203-72882360 (+)
SPRET/EiJ	ENSMSPG00010051620	snRNA gene	Chr15:74494572-74494729 (+)
WSB/EiJ	ENSIUOG00005050059	snRNA gene	Chr15:73003301-73003458 (+)

Homology

• Gene Tree
  Gm55442
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076340 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076340	Ensembl Gene Model | MGI Sequence Detail	158	C57BL/6J
transcript	ENSMUST00020183260	Ensembl | MGI Sequence Detail	158	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55442:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131708	Chr15:75906546-75906563 (+)	-1,753 bp