Gm55431 Gene Detail

Summary

• Symbol
  Gm55431
• Name
  predicted gene, 55431

• Feature Type
  snoRNA gene
• IDs
  MGI:6847332
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:116968069-116968261 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847332	snoRNA gene	Chr11:116968069-116968261 (+)
129S1/SvImJ	ENSMUSG00200052661	snoRNA gene	Chr11:114334581-114334773 (+)
A/J	ENSMUSG00195032318	snoRNA gene	Chr11:114009090-114009282 (+)
AKR/J	ENSMUSG00220033068	snoRNA gene	Chr11:114159646-114159838 (+)
BALB/cJ	ENSMUSG00180052652	snoRNA gene	Chr11:114294379-114294571 (+)
C3H/HeJ	ENSMUSG00175047209	snoRNA gene	Chr11:114260800-114260992 (+)
C57BL/6NJ	ENSMUSG00215047360	snoRNA gene	Chr11:113828374-113828566 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035989	snoRNA gene	Chr11:113679233-113679425 (+)
CBA/J	ENSMUSG00210050785	snoRNA gene	Chr11:113974888-113975080 (+)
DBA/2J	ENSMUSG00185026840	snoRNA gene	Chr11:114287941-114288133 (+)
FVB/NJ	ENSMUSG00205047201	snoRNA gene	Chr11:114132191-114132383 (+)
JF1/MsJ	ENSUMUG00000055250	snoRNA gene	Chr11:114575574-114575766 (+)
LP/J	ENSMUSG00230051304	snoRNA gene	Chr11:115353961-115354153 (+)
NOD/ShiLtJ	ENSMUSG00190049737	snoRNA gene	Chr11:114356379-114356571 (+)
NZO/HlLtJ	ENSMUSG00225053417	snoRNA gene	Chr11:117502123-117502315 (+)
PWK/PhJ	ENSLUMG00010023846	snoRNA gene	Chr11:114087480-114087672 (+)
SPRET/EiJ	ENSMSPG00010044473	snoRNA gene	Chr11:114643977-114644169 (+)
WSB/EiJ	ENSIUOG00005049186	snoRNA gene	Chr11:114091248-114091440 (+)

Homology

• Gene Tree
  Gm55431
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076896 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076896	Ensembl Gene Model | MGI Sequence Detail	193	C57BL/6J
transcript	ENSMUST00020182044	Ensembl | MGI Sequence Detail	193	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55431:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106013	Chr11:116967998-116968031 (+)	-54 bp
Tssr106014	Chr11:116968065-116968071 (+)	-1 bp