Gm55390 Gene Detail

Summary

• Symbol
  Gm55390
• Name
  predicted gene, 55390

• Feature Type
  miRNA gene
• IDs
  MGI:6847251
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:11219397-11219497 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847251	miRNA gene	Chr3:11219397-11219497 (+)
129S1/SvImJ	ENSMUSG00200000766	miRNA gene	Chr3:7910286-7910386 (+)
A/J	ENSMUSG00195001208	miRNA gene	Chr3:8231145-8231245 (+)
AKR/J	ENSMUSG00220017228	miRNA gene	Chr3:8083634-8083734 (+)
BALB/cJ	ENSMUSG00180007334	miRNA gene	Chr3:8253274-8253374 (+)
C3H/HeJ	ENSMUSG00175005116	miRNA gene	Chr3:8239556-8239656 (+)
C57BL/6NJ	ENSMUSG00215005561	miRNA gene	Chr3:8253888-8253988 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000325	miRNA gene	Chr3:8264344-8264444 (+)
CBA/J	ENSMUSG00210000795	miRNA gene	Chr3:8224679-8224779 (+)
DBA/2J	ENSMUSG00185000524	miRNA gene	Chr3:8236092-8236192 (+)
FVB/NJ	ENSMUSG00205006173	miRNA gene	Chr3:7994268-7994368 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230004765	miRNA gene	Chr3:10143179-10143279 (+)
NOD/ShiLtJ	ENSMUSG00190023019	miRNA gene	Chr3:8342826-8342926 (+)
NZO/HlLtJ	ENSMUSG00225000733	miRNA gene	Chr3:12723489-12723589 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005000764	miRNA gene	Chr3:8234311-8234411 (+)

Homology

• Gene Tree
  Gm55390
  

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00002076512 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076512	Ensembl Gene Model | MGI Sequence Detail	101	C57BL/6J
transcript	ENSMUST00020182950	Ensembl | MGI Sequence Detail	101	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;