Gm55354 Gene Detail

Summary

• Symbol
  Gm55354
• Name
  predicted gene, 55354

• Feature Type
  rRNA gene
• IDs
  MGI:6847179
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:181668018-181668133 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847179	rRNA gene	Chr1:181668018-181668133 (-)
129S1/SvImJ	ENSMUSG00200024000	rRNA gene	Chr1:179428545-179428660 (-)
A/J	ENSMUSG00195044862	rRNA gene	Chr1:179026153-179026268 (-)
AKR/J	ENSMUSG00220022156	rRNA gene	Chr1:178280684-178280799 (-)
BALB/cJ	ENSMUSG00180039719	rRNA gene	Chr1:179079859-179079974 (-)
C3H/HeJ	ENSMUSG00175041287	rRNA gene	Chr1:179255578-179255693 (-)
C57BL/6NJ	ENSMUSG00215028231	rRNA gene	Chr1:178481301-178481416 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044226	rRNA gene	Chr1:177008129-177008244 (-)
CBA/J	ENSMUSG00210019455	rRNA gene	Chr1:178920585-178920700 (-)
DBA/2J	ENSMUSG00185038147	rRNA gene	Chr1:183540001-183540116 (-)
FVB/NJ	ENSMUSG00205038875	rRNA gene	Chr1:177971134-177971249 (-)
JF1/MsJ	ENSUMUG00000005956	rRNA gene	Chr1:182520122-182520237 (-)
LP/J	ENSMUSG00230033756	rRNA gene	Chr1:183087835-183087950 (-)
NOD/ShiLtJ	ENSMUSG00190037060	rRNA gene	Chr1:178942709-178942824 (-)
NZO/HlLtJ	ENSMUSG00225011428	rRNA gene	Chr1:186844492-186844607 (-)
PWK/PhJ	ENSLUMG00010017352	rRNA gene	Chr1:177786691-177786806 (-)
SPRET/EiJ	ENSMSPG00010037179	rRNA gene	Chr1:181256737-181256852 (-)
WSB/EiJ	ENSIUOG00005011824	rRNA gene	Chr1:178136423-178136538 (-)

Homology

• Gene Tree
  Gm55354
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075457 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075457	Ensembl Gene Model | MGI Sequence Detail	116	C57BL/6J
transcript	ENSMUST00020183545	Ensembl | MGI Sequence Detail	116	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55354:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15588	Chr1:181668578-181668585 (-)	-449 bp