Gm55307 Gene Detail

Summary

• Symbol
  Gm55307
• Name
  predicted gene, 55307

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6847085
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:102394343-102394524 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847085	unclassified non-coding RNA gene	Chr15:102394343-102394524 (+)
129S1/SvImJ	ENSMUSG00200052721	unclassified non-coding RNA gene	Chr15:99619272-99619453 (+)
A/J	ENSMUSG00195046692	unclassified non-coding RNA gene	Chr15:99508786-99508967 (+)
AKR/J	ENSMUSG00220050006	unclassified non-coding RNA gene	Chr15:99478937-99479118 (+)
BALB/cJ	ENSMUSG00180047605	unclassified non-coding RNA gene	Chr15:99391904-99392085 (+)
C3H/HeJ	ENSMUSG00175046425	unclassified non-coding RNA gene	Chr15:99710628-99710809 (+)
C57BL/6NJ	ENSMUSG00215051607	unclassified non-coding RNA gene	Chr15:99435334-99435515 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047180	unclassified non-coding RNA gene	Chr15:98916212-98916393 (+)
CBA/J	ENSMUSG00210033011	unclassified non-coding RNA gene	Chr15:99461805-99461986 (+)
DBA/2J	ENSMUSG00185044050	unclassified non-coding RNA gene	Chr15:99478766-99478947 (+)
FVB/NJ	ENSMUSG00205047910	unclassified non-coding RNA gene	Chr15:99183518-99183699 (+)
JF1/MsJ	ENSUMUG00000057613	unclassified non-coding RNA gene	Chr15:98940633-98940814 (+)
LP/J	ENSMUSG00230006824	unclassified non-coding RNA gene	Chr15:102840288-102840469 (+)
NOD/ShiLtJ	ENSMUSG00190050369	unclassified non-coding RNA gene	Chr15:99423627-99423808 (+)
NZO/HlLtJ	ENSMUSG00225028152	unclassified non-coding RNA gene	Chr15:103019947-103020128 (+)
PWK/PhJ	ENSLUMG00010051096	unclassified non-coding RNA gene	Chr15:99150841-99151022 (+)
SPRET/EiJ	ENSMSPG00010050037	unclassified non-coding RNA gene	Chr15:100938653-100938834 (+)
WSB/EiJ	ENSIUOG00005040474	unclassified non-coding RNA gene	Chr15:99568960-99569141 (+)

Homology

• Gene Tree
  Gm55307
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076508 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076508	Ensembl Gene Model | MGI Sequence Detail	182	C57BL/6J
transcript	ENSMUST00020183691	Ensembl | MGI Sequence Detail	182	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55307:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133438	Chr15:102392588-102392623 (+)	-1,737 bp
Tssr133439	Chr15:102392630-102392639 (+)	-1,708 bp
Tssr133440	Chr15:102394405-102394425 (+)	72 bp