Gm55294 Gene Detail

Summary

• Symbol
  Gm55294
• Name
  predicted gene, 55294

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6847059
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr13:56851454-56851580 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847059	unclassified non-coding RNA gene	Chr13:56851454-56851580 (+)
129S1/SvImJ	ENSMUSG00200016889	unclassified non-coding RNA gene	Chr13:53728434-53728560 (+)
A/J	ENSMUSG00195045606	unclassified non-coding RNA gene	Chr13:53196039-53196165 (+)
AKR/J	ENSMUSG00220044914	unclassified non-coding RNA gene	Chr13:52732172-52732298 (+)
BALB/cJ	ENSMUSG00180016926	unclassified non-coding RNA gene	Chr13:53441529-53441655 (+)
C3H/HeJ	ENSMUSG00175041360	unclassified non-coding RNA gene	Chr13:53227695-53227821 (+)
C57BL/6NJ	ENSMUSG00215039351	unclassified non-coding RNA gene	Chr13:53254235-53254361 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040362	unclassified non-coding RNA gene	Chr13:53642353-53642479 (+)
CBA/J	ENSMUSG00210041628	unclassified non-coding RNA gene	Chr13:53432652-53432778 (+)
DBA/2J	ENSMUSG00185018306	unclassified non-coding RNA gene	Chr13:54279713-54279839 (+)
FVB/NJ	ENSMUSG00205043549	unclassified non-coding RNA gene	Chr13:53078775-53078901 (+)
JF1/MsJ	ENSUMUG00000038969	unclassified non-coding RNA gene	Chr13:53682671-53682797 (+)
LP/J	ENSMUSG00230034098	unclassified non-coding RNA gene	Chr13:63631898-63632024 (+)
NOD/ShiLtJ	ENSMUSG00190036704	unclassified non-coding RNA gene	Chr13:53331334-53331460 (+)
NZO/HlLtJ	ENSMUSG00225034638	unclassified non-coding RNA gene	Chr13:57350911-57351037 (+)
PWK/PhJ	ENSLUMG00010023033	unclassified non-coding RNA gene	Chr13:52567929-52568055 (+)
SPRET/EiJ	ENSMSPG00010041518	unclassified non-coding RNA gene	Chr13:52973307-52973433 (+)
WSB/EiJ	ENSIUOG00005027107	unclassified non-coding RNA gene	Chr13:52754395-52754521 (+)

Homology

• Gene Tree
  Gm55294
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075104 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075104	Ensembl Gene Model | MGI Sequence Detail	127	C57BL/6J
transcript	ENSMUST00020183588	Ensembl | MGI Sequence Detail	127	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55294:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120047	Chr13:56851173-56851244 (+)	-245 bp
Tssr120048	Chr13:56851250-56851258 (+)	-200 bp
Tssr120049	Chr13:56851262-56851273 (+)	-186 bp
Tssr120050	Chr13:56851317-56851350 (+)	-120 bp