Gm55253 Gene Detail

Summary

• Symbol
  Gm55253
• Name
  predicted gene, 55253

• Feature Type
  miRNA gene
• IDs
  MGI:6846978
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:8253866-8253975 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  52

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846978	miRNA gene	Chr5:8253866-8253975 (-)
129S1/SvImJ	ENSMUSG00200003072	miRNA gene	Chr5:4964799-4964908 (-)
129S1/SvImJ	ENSMUSG00200005116	miRNA gene	Chr1:38823326-38823431 (-)
A/J	ENSMUSG00195045622	miRNA gene	Chr1:38504453-38504558 (-)
A/J	ENSMUSG00195012371	miRNA gene	Chr5:4957628-4957737 (-)
AKR/J	ENSMUSG00220020551	miRNA gene	Chr9:118172587-118172696 (+)
AKR/J	ENSMUSG00220032501	miRNA gene	Chr15:40363377-40363485 (+)
AKR/J	ENSMUSG00220008649	miRNA gene	Chr14:81154196-81154305 (+)
AKR/J	ENSMUSG00220011999	miRNA gene	Chr7:41398072-41398179 (+)
AKR/J	ENSMUSG00220010063	miRNA gene	Chr1:38489515-38489620 (-)
AKR/J	ENSMUSG00220002466	miRNA gene	Chr5:4879159-4879268 (-)
BALB/cJ	ENSMUSG00180010421	miRNA gene	Chr14:81248090-81248199 (+)
BALB/cJ	ENSMUSG00180047208	miRNA gene	Chr7:91258557-91258666 (+)
BALB/cJ	ENSMUSG00180018301	miRNA gene	Chr5:4713265-4713374 (-)
BALB/cJ	ENSMUSG00180034964	miRNA gene	Chr15:40416827-40416935 (+)
C3H/HeJ	ENSMUSG00175030259	miRNA gene	Chr5:4888482-4888591 (-)
C57BL/6NJ	ENSMUSG00215027761	miRNA gene	Chr5:5170096-5170205 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001975	miRNA gene	Chr5:5080670-5080779 (-)
CBA/J	ENSMUSG00210006825	miRNA gene	Chr1:38298694-38298799 (-)
CBA/J	ENSMUSG00210002973	miRNA gene	Chr5:5259010-5259119 (-)
DBA/2J	ENSMUSG00185029377	miRNA gene	Chr5:5256889-5256998 (-)
DBA/2J	ENSMUSG00185011712	miRNA gene	Chr1:39399757-39399862 (-)
FVB/NJ	ENSMUSG00205049662	miRNA gene	Chr14:39875062-39875171 (+)
FVB/NJ	ENSMUSG00205008634	miRNA gene	Chr5:4973791-4973900 (-)
FVB/NJ	ENSMUSG00205004444	miRNA gene	Chr1:43593496-43593605 (-)
JF1/MsJ	ENSUMUG00000016382	miRNA gene	Chr8:66077838-66077947 (-)
JF1/MsJ	ENSUMUG00000004418	miRNA gene	Chr5:5304631-5304740 (-)
LP/J	ENSMUSG00230027581	miRNA gene	Chr1:39427602-39427707 (-)
LP/J	ENSMUSG00230003536	miRNA gene	Chr5:9212392-9212501 (-)
NOD/ShiLtJ	ENSMUSG00190013776	miRNA gene	Chr5:4782473-4782582 (-)
NZO/HlLtJ	ENSMUSG00225008729	miRNA gene	Chr5:12947768-12947877 (-)
NZO/HlLtJ	ENSMUSG00225001199	miRNA gene	Chr1:42684225-42684330 (-)
PWK/PhJ	ENSLUMG00010019943	miRNA gene	Chr5:5211300-5211409 (-)
PWK/PhJ	ENSLUMG00010013988	miRNA gene	Chr8:57522172-57522281 (-)
SPRET/EiJ	ENSMSPG00010021063	miRNA gene	Chr12:99602250-99602359 (-)
SPRET/EiJ	ENSMSPG00010005381	miRNA gene	Chr5:5093164-5093273 (-)
SPRET/EiJ	ENSMSPG00010005195	miRNA gene	Chr4:66475070-66475179 (-)
SPRET/EiJ	ENSMSPG00010000190	miRNA gene	Chr3:5256419-5256528 (+)
SPRET/EiJ	ENSMSPG00010048432	miRNA gene	Chr3:97464704-97464813 (+)
SPRET/EiJ	ENSMSPG00010047554	miRNA gene	Chr7:35091737-35091846 (-)
SPRET/EiJ	ENSMSPG00010000189	miRNA gene	Chr3:5251857-5251966 (+)
SPRET/EiJ	ENSMSPG00010044258	miRNA gene	Chr2:39335487-39335591 (+)
SPRET/EiJ	ENSMSPG00010007211	miRNA gene	Chr15:44581347-44581456 (-)
SPRET/EiJ	ENSMSPG00010049618	miRNA gene	Chr14:49573670-49573779 (-)
SPRET/EiJ	ENSMSPG00010039048	miRNA gene	Chr5:66576950-66577059 (+)
WSB/EiJ	ENSIUOG00005041565	miRNA gene	Chr1:38427061-38427170 (-)
WSB/EiJ	ENSIUOG00005041540	miRNA gene	Chr11:53942664-53942773 (-)
WSB/EiJ	ENSIUOG00005006134	miRNA gene	Chr7:45145630-45145737 (+)
WSB/EiJ	ENSIUOG00005027815	miRNA gene	Chr5:4975130-4975239 (-)
WSB/EiJ	ENSIUOG00005027293	miRNA gene	Chr6:66327108-66327217 (-)
WSB/EiJ	ENSIUOG00005004767	miRNA gene	Chr14:80802132-80802241 (+)
WSB/EiJ	ENSIUOG00005035316	miRNA gene	Chr15:40476899-40477007 (+)

Homology

• Gene Tree
  Gm55253
  

Sequences &
Gene Models

• All Sequences
  54

• Ensembl
  ENSMUSG00002075737 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075737	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020182695	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;