Gm55239 Gene Detail

Summary

• Symbol
  Gm55239
• Name
  predicted gene, 55239

• Feature Type
  miRNA gene
• IDs
  MGI:6846950
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:84990088-84990167 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846950	miRNA gene	Chr1:84990088-84990167 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195032544	miRNA gene	Chr1:82085463-82085542 (+)
AKR/J	ENSMUSG00220045228	miRNA gene	Chr1:81668639-81668718 (-)
BALB/cJ	ENSMUSG00180017460	miRNA gene	Chr1:82341913-82341992 (+)
C3H/HeJ	ENSMUSG00175001416	miRNA gene	Chr1:82502317-82502396 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007468	miRNA gene	Chr1:82037597-82037676 (+)
CBA/J	ENSMUSG00210012351	miRNA gene	Chr1:82206611-82206690 (-)
DBA/2J	ENSMUSG00185016728	miRNA gene	Chr1:83296416-83296495 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000023289	miRNA gene	Chr1:83468965-83469044 (+)
JF1/MsJ	ENSUMUG00000023265	miRNA gene	Chr1:83180573-83180652 (+)
LP/J	ENSMUSG00230021548	miRNA gene	Chr1:83233956-83234035 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225004453	miRNA gene	Chr1:86477764-86477843 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm55239
  

Sequences &
Gene Models

• All Sequences
  14

• Ensembl
  ENSMUSG00002076475 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076475	Ensembl Gene Model | MGI Sequence Detail	80	C57BL/6J
transcript	ENSMUST00020183359	Ensembl | MGI Sequence Detail	80	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;