Gm55171 Gene Detail

Summary

• Symbol
  Gm55171
• Name
  predicted gene, 55171

• Feature Type
  rRNA gene
• IDs
  MGI:6846815
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:12780170-12780290 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846815	rRNA gene	Chr9:12780170-12780290 (+)
129S1/SvImJ	ENSMUSG00200023135	rRNA gene	Chr9:9679463-9679583 (+)
A/J	ENSMUSG00195019659	rRNA gene	Chr9:9558955-9559075 (+)
AKR/J	ENSMUSG00220018751	rRNA gene	Chr9:9493059-9493179 (+)
BALB/cJ	ENSMUSG00180011818	rRNA gene	Chr9:9682946-9683066 (+)
C3H/HeJ	ENSMUSG00175024424	rRNA gene	Chr9:9624741-9624861 (+)
C57BL/6NJ	ENSMUSG00215007023	rRNA gene	Chr9:9630476-9630596 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007599	rRNA gene	Chr9:9630986-9631106 (+)
CBA/J	ENSMUSG00210011049	rRNA gene	Chr9:9666900-9667020 (+)
DBA/2J	ENSMUSG00185005167	rRNA gene	Chr9:9749796-9749916 (+)
FVB/NJ	ENSMUSG00205007477	rRNA gene	Chr9:9721620-9721740 (+)
JF1/MsJ	ENSUMUG00000008842	rRNA gene	Chr9:9729006-9729126 (+)
LP/J	ENSMUSG00230004493	rRNA gene	Chr9:10177649-10177769 (+)
NOD/ShiLtJ	ENSMUSG00190022654	rRNA gene	Chr9:9660324-9660444 (+)
NZO/HlLtJ	ENSMUSG00225017105	rRNA gene	Chr9:10089229-10089349 (+)
PWK/PhJ	ENSLUMG00010006506	rRNA gene	Chr9:9676798-9676918 (+)
SPRET/EiJ	ENSMSPG00010005693	rRNA gene	Chr9:9839719-9839839 (+)
WSB/EiJ	ENSIUOG00005007725	rRNA gene	Chr9:9305215-9305335 (+)

Homology

• Gene Tree
  Gm55171
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002074896 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002074896	Ensembl Gene Model | MGI Sequence Detail	121	C57BL/6J
transcript	ENSMUST00020182532	Ensembl | MGI Sequence Detail	121	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;