Gm55118 Gene Detail

Summary

• Symbol
  Gm55118
• Name
  predicted gene, 55118

• Feature Type
  miRNA gene
• IDs
  MGI:6846709
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr16:10961989-10962045 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846709	miRNA gene	Chr16:10961989-10962045 (+)
129S1/SvImJ	ENSMUSG00200012484	miRNA gene	Chr16:7967573-7967629 (+)
A/J	ENSMUSG00195011740	miRNA gene	Chr16:7505637-7505693 (+)
AKR/J	ENSMUSG00220017479	miRNA gene	Chr16:7794445-7794501 (+)
BALB/cJ	ENSMUSG00180008954	miRNA gene	Chr16:7744847-7744903 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215022131	miRNA gene	Chr16:7611527-7611583 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205014149	miRNA gene	Chr16:7814876-7814932 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230046252	miRNA gene	Chr16:10463337-10463393 (+)
NOD/ShiLtJ	ENSMUSG00190027718	miRNA gene	Chr16:7997049-7997105 (+)
NZO/HlLtJ	ENSMUSG00225032312	miRNA gene	Chr16:13681343-13681399 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm55118
  

Sequences &
Gene Models

• All Sequences
  12

• Ensembl
  ENSMUSG00002076173 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076173	Ensembl Gene Model | MGI Sequence Detail	57	C57BL/6J
transcript	ENSMUST00020183322	Ensembl | MGI Sequence Detail	57	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55118:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137075	Chr16:10961767-10961769 (+)	-221 bp
Tssr137076	Chr16:10961831-10961854 (+)	-146 bp
Tssr137077	Chr16:10961906-10961945 (+)	-63 bp
Tssr137078	Chr16:10961959-10961982 (+)	-18 bp