Gm55111 Gene Detail

Summary

• Symbol
  Gm55111
• Name
  predicted gene, 55111

• Feature Type
  snoRNA gene
• IDs
  MGI:6846696
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:109610182-109610252 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846696	snoRNA gene	Chr12:109610182-109610252 (+)
129S1/SvImJ	ENSMUSG00200028671	snoRNA gene	Chr12:101383941-101384011 (+)
A/J	ENSMUSG00195045534	snoRNA gene	Chr12:103915612-103915682 (+)
AKR/J	ENSMUSG00220042594	snoRNA gene	Chr12:101798228-101798298 (+)
BALB/cJ	ENSMUSG00180048614	snoRNA gene	Chr12:103147093-103147163 (+)
C3H/HeJ	ENSMUSG00175040315	snoRNA gene	Chr12:105726180-105726250 (+)
C57BL/6NJ	ENSMUSG00215047311	snoRNA gene	Chr12:102420045-102420115 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021682	snoRNA gene	Chr12:101898247-101898317 (+)
CBA/J	ENSMUSG00210034120	snoRNA gene	Chr12:102787634-102787704 (+)
DBA/2J	ENSMUSG00185028337	snoRNA gene	Chr12:104606316-104606386 (+)
FVB/NJ	ENSMUSG00205039158	snoRNA gene	Chr12:101831955-101832025 (+)
JF1/MsJ	ENSUMUG00000025051	snoRNA gene	Chr12:109364048-109364118 (+)
LP/J	ENSMUSG00230031364	snoRNA gene	Chr12:111648835-111648905 (+)
NOD/ShiLtJ	ENSMUSG00190040181	snoRNA gene	Chr12:83391241-83391311 (-)
NZO/HlLtJ	ENSMUSG00225039254	snoRNA gene	Chr12:113407703-113407773 (+)
PWK/PhJ	ENSLUMG00010045119	snoRNA gene	Chr12:102836508-102836578 (+)
SPRET/EiJ	ENSMSPG00010018303	snoRNA gene	Chr12:105119397-105119467 (+)
WSB/EiJ	ENSIUOG00005009473	snoRNA gene	Chr12:101829382-101829452 (+)

Homology

• Gene Tree
  Gm55111
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076690 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076690	Ensembl Gene Model | MGI Sequence Detail	71	C57BL/6J
transcript	ENSMUST00020181913	Ensembl | MGI Sequence Detail	71	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55111:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115160	Chr12:109609785-109609791 (+)	-394 bp