Gm55109 Gene Detail

Summary

• Symbol
  Gm55109
• Name
  predicted gene, 55109

• Feature Type
  snoRNA gene
• IDs
  MGI:6846692
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:109600202-109600276 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846692	snoRNA gene	Chr12:109600202-109600276 (+)
129S1/SvImJ	ENSMUSG00200028675	snoRNA gene	Chr12:101373961-101374035 (+)
A/J	ENSMUSG00195045548	snoRNA gene	Chr12:103905632-103905706 (+)
AKR/J	ENSMUSG00220042610	snoRNA gene	Chr12:101788263-101788337 (+)
BALB/cJ	ENSMUSG00180048622	snoRNA gene	Chr12:103137113-103137187 (+)
C3H/HeJ	ENSMUSG00175040331	snoRNA gene	Chr12:105716217-105716291 (+)
C57BL/6NJ	ENSMUSG00215047319	snoRNA gene	Chr12:102410065-102410139 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021695	snoRNA gene	Chr12:101888292-101888366 (+)
CBA/J	ENSMUSG00210034130	snoRNA gene	Chr12:102777669-102777743 (+)
DBA/2J	ENSMUSG00185028339	snoRNA gene	Chr12:104596354-104596428 (+)
FVB/NJ	ENSMUSG00205039190	snoRNA gene	Chr12:101821976-101822050 (+)
JF1/MsJ	ENSUMUG00000025075	snoRNA gene	Chr12:109354054-109354128 (+)
LP/J	ENSMUSG00230032218	snoRNA gene	Chr12:111638855-111638929 (+)
NOD/ShiLtJ	ENSMUSG00190040221	snoRNA gene	Chr12:83401262-83401336 (-)
NZO/HlLtJ	ENSMUSG00225039727	snoRNA gene	Chr12:113397723-113397797 (+)
PWK/PhJ	ENSLUMG00010045132	snoRNA gene	Chr12:102826474-102826548 (+)
SPRET/EiJ	ENSMSPG00010018312	snoRNA gene	Chr12:105109449-105109523 (+)
WSB/EiJ	ENSIUOG00005009478	snoRNA gene	Chr12:101819400-101819474 (+)

Homology

• Gene Tree
  Gm55109
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075266 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075266	Ensembl Gene Model | MGI Sequence Detail	75	C57BL/6J
transcript	ENSMUST00020182027	Ensembl | MGI Sequence Detail	75	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55109:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115152	Chr12:109598359-109598362 (+)	-1,841 bp
Tssr115153	Chr12:109599642-109599646 (+)	-558 bp