Gm55107 Gene Detail

Summary

• Symbol
  Gm55107
• Name
  predicted gene, 55107

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6846688
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:109570316-109570413 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  18 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846688	unclassified non-coding RNA gene	Chr12:109570316-109570413 (+)
129S1/SvImJ	ENSMUSG00200028254	unclassified non-coding RNA gene	Chr12:101344070-101344167 (+)
A/J	ENSMUSG00195049401	unclassified non-coding RNA gene	Chr12:103875787-103875884 (+)
AKR/J	ENSMUSG00220041636	unclassified non-coding RNA gene	Chr12:101758333-101758429 (+)
BALB/cJ	ENSMUSG00180052667	unclassified non-coding RNA gene	Chr12:103107221-103107318 (+)
C3H/HeJ	ENSMUSG00175044417	unclassified non-coding RNA gene	Chr12:105686289-105686385 (+)
C57BL/6NJ	ENSMUSG00215049673	unclassified non-coding RNA gene	Chr12:102380176-102380273 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020877	unclassified non-coding RNA gene	Chr12:101858963-101859060 (+)
CBA/J	ENSMUSG00210032125	unclassified non-coding RNA gene	Chr12:102747742-102747838 (+)
DBA/2J	ENSMUSG00185029351	unclassified non-coding RNA gene	Chr12:104566479-104566576 (+)
FVB/NJ	ENSMUSG00205046425	unclassified non-coding RNA gene	Chr12:101792083-101792180 (+)
JF1/MsJ	ENSUMUG00000036699	unclassified non-coding RNA gene	Chr12:109324161-109324258 (+)
LP/J	ENSMUSG00230032216	unclassified non-coding RNA gene	Chr12:111608969-111609066 (+)
NOD/ShiLtJ	ENSMUSG00190027568	unclassified non-coding RNA gene	Chr12:83431102-83431199 (-)
NZO/HlLtJ	ENSMUSG00225039725	unclassified non-coding RNA gene	Chr12:113367838-113367935 (+)
PWK/PhJ	ENSLUMG00010047659	unclassified non-coding RNA gene	Chr12:102796591-102796688 (+)
SPRET/EiJ	ENSMSPG00010018590	unclassified non-coding RNA gene	Chr12:105079941-105080039 (+)
WSB/EiJ	ENSIUOG00005009429	unclassified non-coding RNA gene	Chr12:101789601-101789698 (+)

Homology

• Gene Tree
  Gm55107
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075279 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075279	Ensembl Gene Model | MGI Sequence Detail	98	C57BL/6J
transcript	ENSMUST00020182691	Ensembl | MGI Sequence Detail	98	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55107:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115139	Chr12:109569447-109569458 (+)	-863 bp
Tssr115140	Chr12:109569472-109569501 (+)	-829 bp