Gm55085 Gene Detail

Summary

• Symbol
  Gm55085
• Name
  predicted gene, 55085

• Feature Type
  snoRNA gene
• IDs
  MGI:6846644
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  ChrX:77594352-77594485 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846644	snoRNA gene	ChrX:77594352-77594485 (-)
129S1/SvImJ	ENSMUSG00200043914	snoRNA gene	ChrX:59562974-59563107 (-)
A/J	ENSMUSG00195041691	snoRNA gene	ChrX:63320487-63320620 (-)
AKR/J	ENSMUSG00220046807	snoRNA gene	ChrX:58431870-58432003 (-)
BALB/cJ	ENSMUSG00180050171	snoRNA gene	ChrX:59894299-59894432 (-)
C3H/HeJ	ENSMUSG00175030806	snoRNA gene	ChrX:63472451-63472584 (-)
C57BL/6NJ	ENSMUSG00215041830	snoRNA gene	ChrX:59998646-59998779 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038685	snoRNA gene	ChrX:61225138-61225270 (-)
CBA/J	ENSMUSG00210045883	snoRNA gene	ChrX:60167477-60167610 (-)
DBA/2J	ENSMUSG00185038370	snoRNA gene	ChrX:72574341-72574474 (-)
FVB/NJ	ENSMUSG00205040655	snoRNA gene	ChrX:59488270-59488403 (-)
JF1/MsJ	ENSUMUG00000028384	snoRNA gene	ChrX:93385077-93385209 (-)
LP/J	ENSMUSG00230037103	snoRNA gene	ChrX:79187256-79187389 (-)
NOD/ShiLtJ	ENSMUSG00190044583	snoRNA gene	ChrX:59453346-59453479 (-)
NZO/HlLtJ	ENSMUSG00225047862	snoRNA gene	ChrX:84357419-84357552 (-)
PWK/PhJ	ENSLUMG00010046844	snoRNA gene	ChrX:59067759-59067891 (-)
SPRET/EiJ	ENSMSPG00010023489	snoRNA gene	ChrX:62666892-62667025 (-)
WSB/EiJ	ENSIUOG00005049867	snoRNA gene	ChrX:60136371-60136504 (-)

Homology

• Gene Tree
  Gm55085
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075818 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075818	Ensembl Gene Model | MGI Sequence Detail	134	C57BL/6J
transcript	ENSMUST00020183318	Ensembl | MGI Sequence Detail	134	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55085:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163710	ChrX:77596424-77596429 (-)	-1,942 bp
Tssr163709	ChrX:77596399-77596419 (-)	-1,924 bp
Tssr163708	ChrX:77596381-77596392 (-)	-1,902 bp
Tssr163707	ChrX:77596364-77596368 (-)	-1,881 bp