Gm54996 Gene Detail

Summary

• Symbol
  Gm54996
• Name
  predicted gene, 54996

• Feature Type
  rRNA gene
• IDs
  MGI:6846467
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:161020095-161020222 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  60 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846467	rRNA gene	ChrX:161020095-161020222 (+)
129S1/SvImJ	ENSMUSG00200026927	rRNA gene	ChrX:137747601-137747728 (+)
A/J	ENSMUSG00195038088	rRNA gene	ChrX:142867227-142867354 (+)
AKR/J	ENSMUSG00220032353	rRNA gene	ChrX:134729819-134729946 (+)
BALB/cJ	ENSMUSG00180041448	rRNA gene	ChrX:138246111-138246238 (+)
C3H/HeJ	ENSMUSG00175027424	rRNA gene	ChrX:142803147-142803274 (+)
C57BL/6NJ	ENSMUSG00215027864	rRNA gene	ChrX:138637482-138637609 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034061	rRNA gene	ChrX:140367245-140367372 (+)
CBA/J	ENSMUSG00210040074	rRNA gene	ChrX:140140636-140140763 (+)
DBA/2J	ENSMUSG00185031412	rRNA gene	ChrX:155074015-155074142 (+)
FVB/NJ	ENSMUSG00205032189	rRNA gene	ChrX:138747462-138747589 (+)
JF1/MsJ	ENSUMUG00000038136	rRNA gene	ChrX:175442051-175442178 (+)
LP/J	ENSMUSG00230014656	rRNA gene	ChrX:161863402-161863529 (+)
NOD/ShiLtJ	ENSMUSG00190036787	rRNA gene	ChrX:139243781-139243908 (+)
NZO/HlLtJ	ENSMUSG00225039085	rRNA gene	ChrX:165252642-165252769 (+)
PWK/PhJ	ENSLUMG00010042939	rRNA gene	ChrX:136536316-136536443 (+)
SPRET/EiJ	ENSMSPG00010020392	rRNA gene	ChrX:141664412-141664539 (+)
WSB/EiJ	ENSIUOG00005026167	rRNA gene	ChrX:139532973-139533100 (+)

Homology

• Gene Tree
  Gm54996
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076355 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076355	Ensembl Gene Model | MGI Sequence Detail	128	C57BL/6J
transcript	ENSMUST00020182274	Ensembl | MGI Sequence Detail	128	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;