Gm54989 Gene Detail

Summary

• Symbol
  Gm54989
• Name
  predicted gene, 54989

• Feature Type
  miRNA gene
• IDs
  MGI:6846453
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:42853776-42853885 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846453	miRNA gene	Chr7:42853776-42853885 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195051216	miRNA gene	Chr7:34479507-34479616 (+)
AKR/J	ENSMUSG00220053701	miRNA gene	Chr7:28777606-28777715 (+)
BALB/cJ	ENSMUSG00180043021	miRNA gene	Chr7:31355020-31355129 (+)
C3H/HeJ	ENSMUSG00175041179	miRNA gene	Chr7:31875320-31875429 (+)
C57BL/6NJ	ENSMUSG00215045590	miRNA gene	Chr7:31145093-31145202 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048751	miRNA gene	Chr7:34855932-34856041 (+)
CBA/J	ENSMUSG00210050494	miRNA gene	Chr7:32170706-32170815 (+)
CBA/J	ENSMUSG00210050360	miRNA gene	Chr7:32252082-32252191 (+)
DBA/2J	ENSMUSG00185048075	miRNA gene	Chr7:36117236-36117345 (+)
FVB/NJ	ENSMUSG00205049942	miRNA gene	Chr7:31797242-31797351 (+)
JF1/MsJ	ENSUMUG00000054379	miRNA gene	Chr7:40604056-40604165 (+)
LP/J	ENSMUSG00230051628	miRNA gene	Chr7:41558976-41559085 (+)
LP/J	ENSMUSG00230051627	miRNA gene	Chr7:41433607-41433716 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225010455	miRNA gene	Chr7:39745523-39745632 (+)
PWK/PhJ	ENSLUMG00010051385	miRNA gene	Chr7:31031921-31032030 (+)
SPRET/EiJ	ENSMSPG00010046126	miRNA gene	Chr7:30796589-30796698 (+)
WSB/EiJ	ENSIUOG00005029864	miRNA gene	Chr7:32687477-32687586 (+)

Homology

• Gene Tree
  Gm54989
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075127 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075127	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020183395	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;