Gm54972 Gene Detail

Summary

• Symbol
  Gm54972
• Name
  predicted gene, 54972

• Feature Type
  miRNA gene
• IDs
  MGI:6846419
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:45115130-45115236 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  66 from dbSNP Build 142
• Strain Annotations
  34

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846419	miRNA gene	Chr3:45115130-45115236 (+)
129S1/SvImJ	ENSMUSG00200002412	miRNA gene	Chr1:47742809-47742912 (-)
129S1/SvImJ	ENSMUSG00200000779	miRNA gene	Chr3:41935524-41935630 (+)
129S1/SvImJ	ENSMUSG00200000439	miRNA gene	Chr3:41935323-41935429 (+)
A/J	ENSMUSG00195000864	miRNA gene	Chr3:41840458-41840564 (+)
AKR/J	ENSMUSG00220016185	miRNA gene	Chr3:41932347-41932453 (+)
AKR/J	ENSMUSG00220015957	miRNA gene	Chr3:41932146-41932252 (+)
BALB/cJ	ENSMUSG00180000674	miRNA gene	Chr3:41982528-41982634 (+)
BALB/cJ	ENSMUSG00180000452	miRNA gene	Chr3:41982327-41982433 (+)
C3H/HeJ	ENSMUSG00175002168	miRNA gene	Chr3:41818504-41818610 (+)
C3H/HeJ	ENSMUSG00175000287	miRNA gene	Chr1:47654876-47654979 (-)
C57BL/6NJ	ENSMUSG00215033075	miRNA gene	Chr4:52615271-52615372 (+)
C57BL/6NJ	ENSMUSG00215000570	miRNA gene	Chr3:42236604-42236710 (+)
C57BL/6NJ	ENSMUSG00215000680	miRNA gene	Chr3:42236805-42236911 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001336	miRNA gene	Chr3:41643025-41643131 (+)
CBA/J	ENSMUSG00210030092	miRNA gene	Chr1:47360159-47360262 (-)
CBA/J	ENSMUSG00210001063	miRNA gene	Chr3:41930374-41930480 (+)
DBA/2J	ENSMUSG00185000467	miRNA gene	Chr3:42144979-42145085 (+)
DBA/2J	ENSMUSG00185000261	miRNA gene	Chr3:42144778-42144884 (+)
FVB/NJ	ENSMUSG00205022170	miRNA gene	Chr5:37345896-37346002 (-)
FVB/NJ	ENSMUSG00205033897	miRNA gene	Chr6:53351613-53351714 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230000401	miRNA gene	Chr3:44111291-44111397 (+)
LP/J	ENSMUSG00230000572	miRNA gene	Chr3:44111492-44111598 (+)
NOD/ShiLtJ	ENSMUSG00190000523	miRNA gene	Chr3:42237752-42237858 (+)
NOD/ShiLtJ	ENSMUSG00190000825	miRNA gene	Chr3:42237953-42238059 (+)
NOD/ShiLtJ	ENSMUSG00190043172	miRNA gene	Chr4:52690436-52690537 (+)
NOD/ShiLtJ	ENSMUSG00190052929	miRNA gene	Chr7:5456854-5456955 (+)
NZO/HlLtJ	ENSMUSG00225000624	miRNA gene	Chr3:46732512-46732618 (+)
NZO/HlLtJ	ENSMUSG00225000996	miRNA gene	Chr3:46732713-46732819 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010052227	miRNA gene	Chr2:87813052-87813154 (-)
SPRET/EiJ	ENSMSPG00010038917	miRNA gene	Chr5:83360954-83361060 (-)
SPRET/EiJ	ENSMSPG00010012684	miRNA gene	Chr7:72055921-72056226 (+)
SPRET/EiJ	ENSMSPG00010017988	miRNA gene	Chr1:121427353-121427459 (-)
WSB/EiJ	ENSIUOG00005000506	miRNA gene	Chr3:42047100-42047205 (+)

Homology

• Gene Tree
  Gm54972
  

Sequences &
Gene Models

• All Sequences
  36

• Ensembl
  ENSMUSG00002075348 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075348	Ensembl Gene Model | MGI Sequence Detail	107	C57BL/6J
transcript	ENSMUST00020183704	Ensembl | MGI Sequence Detail	107	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;