Gm54971 Gene Detail

Summary

• Symbol
  Gm54971
• Name
  predicted gene, 54971

• Feature Type
  snRNA gene
• IDs
  MGI:6846417
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:44937635-44937739 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846417	snRNA gene	Chr3:44937635-44937739 (+)
129S1/SvImJ	ENSMUSG00200000441	snRNA gene	Chr3:41757796-41757900 (+)
A/J	ENSMUSG00195000869	snRNA gene	Chr3:41660484-41660588 (+)
AKR/J	ENSMUSG00220015958	snRNA gene	Chr3:41755715-41755819 (+)
BALB/cJ	ENSMUSG00180000454	snRNA gene	Chr3:41804757-41804861 (+)
C3H/HeJ	ENSMUSG00175002172	snRNA gene	Chr3:41638548-41638652 (+)
C57BL/6NJ	ENSMUSG00215000571	snRNA gene	Chr3:42059066-42059170 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001338	snRNA gene	Chr3:41451046-41451150 (+)
CBA/J	ENSMUSG00210001078	snRNA gene	Chr3:41750437-41750541 (+)
DBA/2J	ENSMUSG00185000262	snRNA gene	Chr3:41967227-41967331 (+)
FVB/NJ	ENSMUSG00205001008	snRNA gene	Chr3:40968194-40968298 (+)
JF1/MsJ	ENSUMUG00000001003	snRNA gene	Chr3:41403404-41403508 (+)
LP/J	ENSMUSG00230000416	snRNA gene	Chr3:43933764-43933868 (+)
NOD/ShiLtJ	ENSMUSG00190000528	snRNA gene	Chr3:42060195-42060299 (+)
NZO/HlLtJ	ENSMUSG00225000641	snRNA gene	Chr3:46554991-46555095 (+)
PWK/PhJ	ENSLUMG00010000866	snRNA gene	Chr3:41475235-41475339 (+)
SPRET/EiJ	ENSMSPG00010007285	snRNA gene	Chr3:42005190-42005294 (+)
WSB/EiJ	ENSIUOG00005000494	snRNA gene	Chr3:41864721-41864825 (+)

Homology

• Gene Tree
  Gm54971
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076732 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076732	Ensembl Gene Model | MGI Sequence Detail	105	C57BL/6J
transcript	ENSMUST00020182351	Ensembl | MGI Sequence Detail	105	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;