Gm54966 Gene Detail

Summary

• Symbol
  Gm54966
• Name
  predicted gene, 54966

• Feature Type
  rRNA gene
• IDs
  MGI:6846407
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:105612102-105612230 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846407	rRNA gene	Chr12:105612102-105612230 (+)
129S1/SvImJ	ENSMUSG00200029869	rRNA gene	Chr12:97381992-97382120 (+)
A/J	ENSMUSG00195022776	rRNA gene	Chr12:99944031-99944159 (+)
AKR/J	ENSMUSG00220041019	rRNA gene	Chr12:97821493-97821621 (+)
BALB/cJ	ENSMUSG00180038554	rRNA gene	Chr12:99132685-99132813 (+)
C3H/HeJ	ENSMUSG00175035214	rRNA gene	Chr12:101761407-101761535 (+)
C57BL/6NJ	ENSMUSG00215041307	rRNA gene	Chr12:98417876-98418004 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022358	rRNA gene	Chr12:97870635-97870763 (+)
CBA/J	ENSMUSG00210014960	rRNA gene	Chr12:98823404-98823532 (+)
DBA/2J	ENSMUSG00185048093	rRNA gene	Chr12:100589065-100589193 (+)
FVB/NJ	ENSMUSG00205019294	rRNA gene	Chr12:97818284-97818412 (+)
JF1/MsJ	ENSUMUG00000026284	rRNA gene	Chr12:105359734-105359862 (+)
LP/J	ENSMUSG00230032742	rRNA gene	Chr12:107647286-107647414 (+)
NOD/ShiLtJ	ENSMUSG00190036554	rRNA gene	Chr12:87391806-87391934 (-)
NZO/HlLtJ	ENSMUSG00225038691	rRNA gene	Chr12:109387776-109387904 (+)
PWK/PhJ	ENSLUMG00010014393	rRNA gene	Chr12:98824967-98825095 (+)
SPRET/EiJ	ENSMSPG00010020943	rRNA gene	Chr12:101121499-101121627 (+)
WSB/EiJ	ENSIUOG00005010074	rRNA gene	Chr12:97825767-97825895 (+)

Homology

• Gene Tree
  Gm54966
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076634 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076634	Ensembl Gene Model | MGI Sequence Detail	129	C57BL/6J
transcript	ENSMUST00020182391	Ensembl | MGI Sequence Detail	129	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;