Gm54964 Gene Detail

Summary

• Symbol
  Gm54964
• Name
  predicted gene, 54964

• Feature Type
  miRNA gene
• IDs
  MGI:6846403
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:57840091-57840197 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  13 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846403	miRNA gene	ChrX:57840091-57840197 (+)
129S1/SvImJ	ENSMUSG00200038200	miRNA gene	ChrX:40154802-40154908 (+)
A/J	ENSMUSG00195009831	miRNA gene	ChrX:43607992-43608098 (+)
AKR/J	ENSMUSG00220041162	miRNA gene	ChrX:39490977-39491083 (+)
BALB/cJ	ENSMUSG00180036482	miRNA gene	ChrX:40239653-40239759 (+)
C3H/HeJ	ENSMUSG00175009383	miRNA gene	ChrX:43790140-43790246 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020245	miRNA gene	ChrX:42035170-42035276 (+)
CBA/J	ENSMUSG00210018950	miRNA gene	ChrX:40583950-40584056 (+)
DBA/2J	ENSMUSG00185035625	miRNA gene	ChrX:52872109-52872215 (+)
FVB/NJ	ENSMUSG00205025574	miRNA gene	ChrX:78125616-78125718 (-)
JF1/MsJ	ENSUMUG00000029629	miRNA gene	ChrX:47181483-47181589 (+)
LP/J	ENSMUSG00230030344	miRNA gene	ChrX:59429038-59429144 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225032618	miRNA gene	ChrX:64674477-64674583 (+)
PWK/PhJ	ENSLUMG00010006408	miRNA gene	Chr1:93795776-93795879 (+)
SPRET/EiJ	ENSMSPG00010038782	miRNA gene	Chr5:85034481-85034587 (-)
SPRET/EiJ	ENSMSPG00010000436	miRNA gene	Chr6:74644577-74644680 (+)
WSB/EiJ	ENSIUOG00005012482	miRNA gene	ChrX:40871021-40871127 (+)

Homology

• Gene Tree
  Gm54964
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00002075721 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075721	Ensembl Gene Model | MGI Sequence Detail	107	C57BL/6J
transcript	ENSMUST00020182114	Ensembl | MGI Sequence Detail	107	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;