Gm54949 Gene Detail

Summary

• Symbol
  Gm54949
• Name
  predicted gene, 54949

• Feature Type
  miRNA gene
• IDs
  MGI:6846373
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:42254580-42254689 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846373	miRNA gene	Chr7:42254580-42254689 (-)
129S1/SvImJ	ENSMUSG00200012379	miRNA gene	Chr12:34900800-34900909 (+)
129S1/SvImJ	ENSMUSG00200001714	miRNA gene	Chr4:2734491-2734600 (-)
129S1/SvImJ	ENSMUSG00200026657	miRNA gene	Chr7:30016153-30016262 (-)
A/J	ENSMUSG00195051429	miRNA gene	Chr7:33880375-33880484 (-)
A/J	ENSMUSG00195003046	miRNA gene	Chr4:3171531-3171640 (-)
AKR/J	ENSMUSG00220053845	miRNA gene	Chr7:20624237-20624277 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215047037	miRNA gene	Chr7:30532786-30532895 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049657	miRNA gene	Chr7:34243515-34243624 (-)
CBA/J	ENSMUSG00210050344	miRNA gene	Chr7:31571701-31571810 (-)
DBA/2J	ENSMUSG00185049597	miRNA gene	Chr7:35476477-35476586 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000003541	miRNA gene	Chr4:3242963-3243072 (-)
JF1/MsJ	ENSUMUG00000004733	miRNA gene	Chr2:108218127-108218236 (+)
JF1/MsJ	ENSUMUG00000012529	miRNA gene	Chr12:18783976-18784080 (+)
JF1/MsJ	ENSUMUG00000033762	miRNA gene	Chr7:39963088-39963197 (-)
JF1/MsJ	ENSUMUG00000055796	miRNA gene	Chr7:40364195-40364304 (+)
JF1/MsJ	ENSUMUG00000012080	miRNA gene	Chr12:19592060-19592166 (+)
JF1/MsJ	ENSUMUG00000046544	miRNA gene	Chr15:86676490-86676599 (+)
LP/J	ENSMUSG00230051617	miRNA gene	Chr7:40834749-40834858 (-)
LP/J	ENSMUSG00230008720	miRNA gene	Chr4:6287507-6287616 (-)
NOD/ShiLtJ	ENSMUSG00190051516	miRNA gene	Chr7:31796639-31796748 (-)
NOD/ShiLtJ	ENSMUSG00190003799	miRNA gene	Chr12:35103052-35103161 (+)
NZO/HlLtJ	ENSMUSG00225010383	miRNA gene	Chr7:39148975-39149084 (-)
PWK/PhJ	ENSLUMG00010051441	miRNA gene	Chr7:30797507-30797616 (+)
PWK/PhJ	ENSLUMG00010051077	miRNA gene	Chr7:30376760-30376869 (-)
PWK/PhJ	ENSLUMG00010006077	miRNA gene	Chr4:2732543-2732652 (-)
SPRET/EiJ	ENSMSPG00010047444	miRNA gene	Chr7:30436575-30436684 (-)
WSB/EiJ	ENSIUOG00005029755	miRNA gene	Chr7:31242935-31243044 (-)
WSB/EiJ	ENSIUOG00005001567	miRNA gene	Chr12:35898150-35898259 (+)
WSB/EiJ	ENSIUOG00005014735	miRNA gene	Chr4:2751863-2751972 (-)

Homology

• Gene Tree
  Gm54949
  

Sequences &
Gene Models

• All Sequences
  32

• Ensembl
  ENSMUSG00002075211 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075211	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020183008	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;