Gm54946 Gene Detail

Summary

• Symbol
  Gm54946
• Name
  predicted gene, 54946

• Feature Type
  rRNA gene
• IDs
  MGI:6846367
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:41284169-41284273 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846367	rRNA gene	Chr10:41284169-41284273 (-)
129S1/SvImJ	ENSMUSG00200009885	rRNA gene	Chr10:38164205-38164309 (-)
A/J	ENSMUSG00195019070	rRNA gene	Chr10:38445644-38445748 (-)
AKR/J	ENSMUSG00220028091	rRNA gene	Chr10:38122154-38122258 (-)
BALB/cJ	ENSMUSG00180016509	rRNA gene	Chr10:38530774-38530878 (-)
C3H/HeJ	ENSMUSG00175012814	rRNA gene	Chr10:38325035-38325139 (-)
C57BL/6NJ	ENSMUSG00215011303	rRNA gene	Chr10:38074354-38074458 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028990	rRNA gene	Chr10:38529320-38529424 (-)
CBA/J	ENSMUSG00210026262	rRNA gene	Chr10:38218504-38218608 (-)
DBA/2J	ENSMUSG00185007468	rRNA gene	Chr10:38371145-38371249 (-)
FVB/NJ	ENSMUSG00205014254	rRNA gene	Chr10:38286303-38286407 (-)
JF1/MsJ	ENSUMUG00000037543	rRNA gene	Chr10:38153574-38153678 (-)
LP/J	ENSMUSG00230015903	rRNA gene	Chr10:40154076-40154180 (-)
NOD/ShiLtJ	ENSMUSG00190032055	rRNA gene	Chr10:38499340-38499444 (-)
NZO/HlLtJ	ENSMUSG00225017663	rRNA gene	Chr10:44464151-44464255 (-)
PWK/PhJ	ENSLUMG00010008283	rRNA gene	Chr10:38284402-38284506 (-)
SPRET/EiJ	ENSMSPG00010021693	rRNA gene	Chr10:39309820-39309924 (-)
WSB/EiJ	ENSIUOG00005015596	rRNA gene	Chr10:38065894-38065998 (-)

Homology

• Gene Tree
  Gm54946
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076974 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076974	Ensembl Gene Model | MGI Sequence Detail	105	C57BL/6J
transcript	ENSMUST00020183800	Ensembl | MGI Sequence Detail	105	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;