Gm54936 Gene Detail

Summary

• Symbol
  Gm54936
• Name
  predicted gene, 54936

• Feature Type
  rRNA gene
• IDs
  MGI:6846347
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:36937695-36937803 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846347	rRNA gene	Chr9:36937695-36937803 (+)
129S1/SvImJ	ENSMUSG00200040028	rRNA gene	Chr9:33922815-33922923 (+)
A/J	ENSMUSG00195051085	rRNA gene	Chr9:33709408-33709516 (+)
AKR/J	ENSMUSG00220046135	rRNA gene	Chr9:33786607-33786715 (+)
BALB/cJ	ENSMUSG00180046184	rRNA gene	Chr9:33837728-33837836 (+)
C3H/HeJ	ENSMUSG00175049577	rRNA gene	Chr9:33838773-33838881 (+)
C57BL/6NJ	ENSMUSG00215037544	rRNA gene	Chr9:33843437-33843545 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044750	rRNA gene	Chr9:33799359-33799467 (+)
CBA/J	ENSMUSG00210045464	rRNA gene	Chr9:33836019-33836127 (+)
DBA/2J	ENSMUSG00185039198	rRNA gene	Chr9:33936027-33936135 (+)
FVB/NJ	ENSMUSG00205046445	rRNA gene	Chr9:34201940-34202048 (+)
JF1/MsJ	ENSUMUG00000045294	rRNA gene	Chr9:34039640-34039748 (+)
LP/J	ENSMUSG00230034357	rRNA gene	Chr9:34297968-34298076 (+)
NOD/ShiLtJ	ENSMUSG00190032538	rRNA gene	Chr9:33966927-33967035 (+)
NZO/HlLtJ	ENSMUSG00225022493	rRNA gene	Chr9:34266153-34266261 (+)
PWK/PhJ	ENSLUMG00010046961	rRNA gene	Chr9:33974756-33974864 (+)
SPRET/EiJ	ENSMSPG00010036246	rRNA gene	Chr9:34540665-34540773 (+)
WSB/EiJ	ENSIUOG00005045740	rRNA gene	Chr9:33461159-33461267 (+)

Homology

• Gene Tree
  Gm54936
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076608 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076608	Ensembl Gene Model | MGI Sequence Detail	109	C57BL/6J
transcript	ENSMUST00020182110	Ensembl | MGI Sequence Detail	109	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;