Gm54897 Gene Detail

Summary

• Symbol
  Gm54897
• Name
  predicted gene, 54897

• Feature Type
  rRNA gene
• IDs
  MGI:6846269
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:23576745-23576861 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846269	rRNA gene	Chr11:23576745-23576861 (-)
129S1/SvImJ	ENSMUSG00200022502	rRNA gene	Chr11:20595276-20595392 (-)
A/J	ENSMUSG00195005330	rRNA gene	Chr11:20442355-20442471 (-)
AKR/J	ENSMUSG00220003677	rRNA gene	Chr11:20531644-20531760 (-)
BALB/cJ	ENSMUSG00180004168	rRNA gene	Chr11:20429437-20429553 (-)
C3H/HeJ	ENSMUSG00175008318	rRNA gene	Chr11:20444156-20444272 (-)
C57BL/6NJ	ENSMUSG00215003377	rRNA gene	Chr11:20515584-20515700 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007462	rRNA gene	Chr11:20396694-20396810 (-)
CBA/J	ENSMUSG00210009634	rRNA gene	Chr11:20433520-20433636 (-)
DBA/2J	ENSMUSG00185011902	rRNA gene	Chr11:20535650-20535766 (-)
FVB/NJ	ENSMUSG00205005194	rRNA gene	Chr11:20495941-20496057 (-)
JF1/MsJ	ENSUMUG00000011224	rRNA gene	Chr11:20768997-20769113 (-)
LP/J	ENSMUSG00230015815	rRNA gene	Chr11:21579390-21579506 (-)
NOD/ShiLtJ	ENSMUSG00190008904	rRNA gene	Chr11:20595708-20595824 (-)
NZO/HlLtJ	ENSMUSG00225022353	rRNA gene	Chr11:23620192-23620308 (-)
PWK/PhJ	ENSLUMG00010012289	rRNA gene	Chr11:20439124-20439240 (-)
SPRET/EiJ	ENSMSPG00010019383	rRNA gene	Chr11:20669611-20669727 (-)
WSB/EiJ	ENSIUOG00005010184	rRNA gene	Chr11:20499510-20499626 (-)

Homology

• Gene Tree
  Gm54897
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075061 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075061	Ensembl Gene Model | MGI Sequence Detail	117	C57BL/6J
transcript	ENSMUST00020183013	Ensembl | MGI Sequence Detail	117	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54897:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107136	Chr11:23577233-23577236 (-)	-374 bp