Gm54885 Gene Detail

Summary

• Symbol
  Gm54885
• Name
  predicted gene, 54885

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6846245
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:50598921-50599234 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846245	unclassified non-coding RNA gene	Chr1:50598921-50599234 (+)
129S1/SvImJ	ENSMUSG00200002148	unclassified non-coding RNA gene	Chr1:48075603-48075916 (+)
A/J	ENSMUSG00195001970	unclassified non-coding RNA gene	Chr1:47970920-47971233 (+)
AKR/J	ENSMUSG00220004097	unclassified non-coding RNA gene	Chr1:47731183-47731496 (+)
BALB/cJ	ENSMUSG00180003331	unclassified non-coding RNA gene	Chr1:47878892-47879205 (+)
C3H/HeJ	ENSMUSG00175000245	unclassified non-coding RNA gene	Chr1:48000533-48000846 (+)
C57BL/6NJ	ENSMUSG00215003039	unclassified non-coding RNA gene	Chr1:47927065-47927378 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000951	unclassified non-coding RNA gene	Chr1:47828127-47828440 (+)
CBA/J	ENSMUSG00210029445	unclassified non-coding RNA gene	Chr1:47705773-47706086 (+)
DBA/2J	ENSMUSG00185031310	unclassified non-coding RNA gene	Chr1:48825341-48825654 (+)
FVB/NJ	ENSMUSG00205004343	unclassified non-coding RNA gene	Chr1:47646935-47647248 (+)
JF1/MsJ	ENSUMUG00000002337	unclassified non-coding RNA gene	Chr1:47774691-47775004 (+)
LP/J	ENSMUSG00230001630	unclassified non-coding RNA gene	Chr1:48820968-48821281 (+)
NOD/ShiLtJ	ENSMUSG00190002720	unclassified non-coding RNA gene	Chr1:47843752-47844065 (+)
NZO/HlLtJ	ENSMUSG00225010209	unclassified non-coding RNA gene	Chr1:52001753-52002066 (+)
PWK/PhJ	ENSLUMG00010002811	unclassified non-coding RNA gene	Chr1:47331624-47331937 (+)
SPRET/EiJ	ENSMSPG00010014040	unclassified non-coding RNA gene	Chr1:49007564-49007877 (+)
WSB/EiJ	ENSIUOG00005003934	unclassified non-coding RNA gene	Chr1:47527891-47528204 (+)

Homology

• Gene Tree
  Gm54885
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075589 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075589	Ensembl Gene Model | MGI Sequence Detail	314	C57BL/6J
transcript	ENSMUST00020182001	Ensembl | MGI Sequence Detail	314	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;