Gm54878 Gene Detail

Summary

• Symbol
  Gm54878
• Name
  predicted gene, 54878

• Feature Type
  miRNA gene
• IDs
  MGI:6846232
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:97920239-97920318 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846232	miRNA gene	Chr11:97920239-97920318 (+)
129S1/SvImJ	ENSMUSG00200053737	miRNA gene	Chr11:95167621-95167700 (+)
A/J	ENSMUSG00195052609	miRNA gene	Chr11:94890250-94890329 (+)
AKR/J	ENSMUSG00220052594	miRNA gene	Chr11:95149363-95149442 (+)
BALB/cJ	ENSMUSG00180052375	miRNA gene	Chr11:95162029-95162108 (+)
C3H/HeJ	ENSMUSG00175052327	miRNA gene	Chr11:95147678-95147757 (+)
C57BL/6NJ	ENSMUSG00215054205	miRNA gene	Chr11:94738331-94738410 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050635	miRNA gene	Chr11:94601083-94601162 (+)
CBA/J	ENSMUSG00210053668	miRNA gene	Chr11:94852315-94852394 (+)
DBA/2J	ENSMUSG00185053173	miRNA gene	Chr11:95197563-95197642 (+)
FVB/NJ	ENSMUSG00205051202	miRNA gene	Chr11:95064469-95064548 (+)
JF1/MsJ	ENSUMUG00000055832	miRNA gene	Chr11:95500023-95500102 (+)
LP/J	ENSMUSG00230050899	miRNA gene	Chr11:96250483-96250562 (+)
NOD/ShiLtJ	ENSMUSG00190053029	miRNA gene	Chr11:95239504-95239583 (+)
NZO/HlLtJ	ENSMUSG00225052409	miRNA gene	Chr11:98303527-98303606 (+)
PWK/PhJ	ENSLUMG00010052075	miRNA gene	Chr11:95052356-95052435 (+)
SPRET/EiJ	ENSMSPG00010050689	miRNA gene	Chr11:95550826-95550905 (+)
WSB/EiJ	ENSIUOG00005050940	miRNA gene	Chr11:95003533-95003612 (+)

Homology

• Gene Tree
  Gm54878
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076889 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076889	Ensembl Gene Model | MGI Sequence Detail	80	C57BL/6J
transcript	ENSMUST00020182364	Ensembl | MGI Sequence Detail	80	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;